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Over-expression of EGFR regulated by RARA contributes to 5-FU resistance in colon cancer
Xin-Yue Gu1, Yang Jiang2, Ming-Qi Li1
1Department of Colorectal Surgery, Harbin Medical University Cancer Hospital, Harbin 150040, People's Republic of China.
Abstract:
A promising new strategy for cancer therapy is to target the autophagic pathway. However, comprehensive characterization of autophagy genes and their clinical relevance in cancer is still lacking. Here, we systematically characterized alterations of autophagy genes in multiple cancer lines by analyzing data from The Cancer Genome Atlas and CellMiner database. Interactions between autophagy genes and clinically actionable genes (CAGs) were identified by analyzing co-expression, protein-protein interactions (PPIs) and transcription factor (TF) data. A key subnetwork was identified that included 18 autophagy genes and 22 CAGs linked by 28 PPI pairs and 1 TF-target pair, which was EGFR targeted by RARA. Alterations in the expression of autophagy genes were associated with patient survival in multiple cancer types. RARA and EGFR were associated with worse survival in colorectal cancer patients. The regulatory role of EGFR in 5-FU resistance was validated in colon cancer cells in vivo and in vitro. EGFR contributed to 5-FU resistance in colon cancer cells through autophagy induction, and EGFR overexpression in 5-FU resistant colon cancer was regulated by RARA. The present study provides a comprehensive analysis of autophagy in different cancer cell lines and highlights the potential clinical utility of targeting autophagy genes.
Insights
Targeting autophagy genes is a new cancer therapy strategy. This study identified key interactions between autophagy and clinically actionable genes, like EGFR and RARA, revealing their role in patient survival and drug resistance.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Targeting the autophagic pathway presents a promising strategy for cancer therapy.
- Comprehensive characterization of autophagy genes and their clinical relevance in cancer is currently lacking.
- Understanding these genes is crucial for developing effective cancer treatments.
Purpose of the Study:
- To systematically characterize alterations in autophagy genes across multiple cancer types.
- To identify interactions between autophagy genes and clinically actionable genes (CAGs).
- To investigate the clinical relevance of autophagy gene alterations and their impact on patient survival and drug resistance.
Main Methods:
- Analysis of The Cancer Genome Atlas and CellMiner databases for autophagy gene alterations.
- Identification of gene interactions using co-expression, protein-protein interactions (PPIs), and transcription factor (TF) data.
- In vivo and in vitro validation of EGFR's role in 5-FU resistance in colon cancer cells.
Main Results:
- A key subnetwork of 18 autophagy genes and 22 CAGs was identified, including EGFR targeted by RARA.
- Alterations in autophagy gene expression were associated with patient survival across multiple cancer types.
- EGFR was found to induce 5-FU resistance in colon cancer cells via autophagy, with RARA regulating EGFR overexpression.
Conclusions:
- This study provides a comprehensive analysis of autophagy gene alterations in various cancer cell lines.
- The findings highlight the potential clinical utility of targeting specific autophagy genes, such as EGFR and RARA, in cancer therapy.
- Targeting the RARA-EGFR axis may overcome 5-FU resistance in colorectal cancer.
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