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JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.

Marcel Friedrichs1, Alban Shoshi1, Piotr Jaroslaw Chmura2

  • 1Bielefeld University, Faculty of Technology, Bioinformatics/Medical Informatics Department, Bielefeld, Germany.

Journal of Integrative Bioinformatics
|January 9, 2020
PubMed
Summary

JIB.tools 2.0 integrates software tool curation into the publication workflow, creating a bridge between journal publications and large bioinformatics registries like bio.tools.

Keywords:
CollectionComputational BiologyDatabases as Topic

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Scientific Publishing

Background:

  • The Journal of Integrative Bioinformatics (JIB) publishes novel tools, software, and databases.
  • Existing bioinformatics registries (e.g., bio.tools) offer extensive software information but can be disconnected from initial publication.
  • A streamlined process is needed to link published tools with accessible registry entries.

Purpose of the Study:

  • To introduce JIB.tools 2.0, an enhanced platform for hosting and managing bioinformatics tools.
  • To closely integrate the curation and publication processes for software tools.
  • To facilitate the transfer of newly published tools from JIB to larger repositories like bio.tools.

Main Methods:

  • Developing JIB.tools 2.0 as a central hub for JIB-published tools.
  • Implementing a workflow for immediate posting of tools upon JIB publication.
  • Establishing a transfer mechanism to populate bio.tools with JIB-curated tools.

Main Results:

  • JIB.tools 2.0 provides an accessible list of tools published in JIB.
  • The platform offers status information for the underlying services of these tools.
  • A direct link is established between JIB publications and their corresponding registry entries.

Conclusions:

  • JIB.tools 2.0 effectively bridges the gap between journal publications and bioinformatics registries.
  • This integration enhances the discoverability and accessibility of bioinformatics software.
  • The new system streamlines the dissemination of research software within the life sciences community.