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Investigating Protein-protein Interactions in Live Cells Using Bioluminescence Resonance Energy Transfer
Published on: May 26, 2014
Conventional and unconventional interactions of the transcription factor FOXL2 uncovered by a proteome-wide analysis
May Penrad-Mobayed1, Caroline Perrin1, Laetitia Herman1
1Institut Jacques Monod, CNRS UMR7592, Université de Paris, Paris, France.
Abstract:
Beyond the study of its transcriptional target genes, the identification of the various interactors of a transcription factor (TF) is crucial to understand its diverse cellular roles. We focused on FOXL2, a winged-helix forkhead TF important for ovarian development and maintenance. FOXL2 has been implicated in diverse cellular processes, including apoptosis, the control of cell cycle or the regulation of steroid hormone synthesis. To reliably identify partners of endogenous FOXL2, we performed a proteome-wide analysis using co-immunoprecipitation in the murine granulosa cell-derived AT29c and the pituitary-derived alpha-T3 cell lines, using three antibodies targeting different parts of the protein. Following a stringent selection of mass spectrometry data on the basis of identification reliability and protein enrichment, we identified a core set of 255 partners common to both cell lines. Their analysis showed that we could co-precipitate several complexes involved in mRNA processing, chromatin remodeling and DNA replication and repair. We further validated (direct and/or indirect) interactions with selected partners, suggesting an unexpected role for FOXL2 in those processes. Overall, this comprehensive analysis of the endogenous FOXL2 interactome sheds light on its numerous and diverse interactors and unconventional cellular roles.
Insights
Researchers identified 255 protein partners of the transcription factor FOXL2, revealing its unexpected roles in mRNA processing, chromatin remodeling, and DNA repair beyond its known functions in ovarian development.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Transcription factors (TFs) regulate gene expression.
- Understanding TF interactors is key to elucidating their cellular functions.
- FOXL2 is a TF crucial for ovarian development and implicated in various cellular processes.
Purpose of the Study:
- To identify endogenous protein partners of FOXL2.
- To explore the diverse cellular roles of FOXL2 through its interactome.
Main Methods:
- Proteome-wide analysis using co-immunoprecipitation.
- Utilized murine granulosa cell-derived AT29c and pituitary-derived alpha-T3 cell lines.
- Mass spectrometry was employed for data analysis and stringent selection.
Main Results:
- Identified a core set of 255 FOXL2 protein partners common to both cell lines.
- Co-precipitated complexes involved in mRNA processing, chromatin remodeling, and DNA replication/repair.
- Validated interactions, suggesting novel roles for FOXL2.
Conclusions:
- FOXL2 interacts with a broad range of proteins involved in fundamental cellular processes.
- FOXL2 plays unexpected roles in mRNA processing, chromatin remodeling, and DNA repair.
- This study provides a comprehensive view of the FOXL2 interactome and its diverse functions.
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