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Updated: Dec 31, 2025

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
Structural insights and activating mutations in diverse pathologies define mechanisms of deregulation for
Yang Liu1, Tom D Bunney2, Sakshi Khosa2
1Discovery Sciences, R&D, AstraZeneca, Cambridge, CB4 0WG, UK.
Background:
PLCγ enzymes are key nodes in cellular signal transduction and their mutated and rare variants have been recently implicated in development of a range of diseases with unmet need including cancer, complex immune disorders, inflammation and neurodegenerative diseases. However, molecular nature of activation and the impact and dysregulation mechanisms by mutations, remain unclear; both are critically dependent on comprehensive characterization of the intact PLCγ enzymes.
Methods:
For structural studies we applied cryo-EM, cross-linking mass spectrometry and hydrogen-deuterium exchange mass spectrometry. In parallel, we compiled mutations linked to main pathologies, established their distribution and assessed their impact in cells and in vitro.
Findings:
We define structure of a complex containing an intact, autoinhibited PLCγ1 and the intracellular part of FGFR1 and show that the interaction is centred on the nSH2 domain of PLCγ1. We define the architecture of PLCγ1 where an autoinhibitory interface involves the cSH2, spPH, TIM-barrel and C2 domains; this relative orientation occludes PLCγ1 access to its substrate. Based on this framework and functional characterization, the mechanism leading to an increase in PLCγ1 activity for the largest group of mutations is consistent with the major, direct impact on the autoinhibitory interface.
Interpretation:
We reveal features of PLCγ enzymes that are important for determining their activation status. Targeting such features, as an alternative to targeting the PLC active site that has so far not been achieved for any PLC, could provide new routes for clinical interventions related to various pathologies driven by PLCγ deregulation. FUND: CR UK, MRC and AstaZeneca.
Insights
Mutations in PLCγ enzymes, crucial for cell signaling, can cause diseases. Understanding their structure and activation mechanism, particularly the autoinhibitory interface, is key for developing new therapies.
Area of Science:
- Biochemistry and Molecular Biology
- Cellular Signal Transduction
- Structural Biology
Background:
- Phospholipase C gamma (PLCγ) enzymes are critical in cellular signaling pathways.
- Mutations in PLCγ are linked to various diseases, including cancer, immune disorders, and neurodegeneration.
- The precise mechanisms of PLCγ activation and mutation-driven dysregulation remain poorly understood.
Purpose of the Study:
- To structurally characterize intact PLCγ enzymes and their interactions.
- To elucidate the molecular basis of PLCγ activation and the impact of disease-associated mutations.
- To identify potential therapeutic targets for PLCγ-related pathologies.
Main Methods:
- Cryo-electron microscopy (cryo-EM) for structural determination.
- Cross-linking mass spectrometry and hydrogen-deuterium exchange mass spectrometry (HDX-MS) for structural and interaction analysis.
- In vitro and cellular assays to assess the functional impact of mutations.
Main Results:
- Defined the structure of an autoinhibited PLCγ1 complexed with FGFR1, highlighting the nSH2 domain's role in interaction.
- Characterized the PLCγ1 architecture, revealing an autoinhibitory interface involving multiple domains (cSH2, spPH, TIM-barrel, C2) that restricts substrate access.
- Identified that common mutations increase PLCγ1 activity by directly disrupting this autoinhibitory interface.
Conclusions:
- Revealed key structural features governing PLCγ enzyme activation status.
- Proposed targeting these features, rather than the active site, as a novel therapeutic strategy for PLCγ deregulation-driven diseases.
- Opened new avenues for clinical interventions in cancer, immune disorders, and neurodegenerative conditions.
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