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Updated: Dec 31, 2025

Quadruple-Checkerboard: A Modification of the Three-Dimensional Checkerboard for Studying Drug Combinations
Published on: July 24, 2021
Effect of tolerance on the evolution of antibiotic resistance under drug combinations
Jiafeng Liu1, Orit Gefen1, Irine Ronin1
1Racah Institute of Physics, Edmond J. Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
Abstract:
Drug combinations are widely used in clinical practice to prevent the evolution of resistance. However, little is known about the effect of tolerance, a different mode of survival, on the efficacy of drug combinations for preventing the evolution of resistance. In this work, we monitored Staphylococcus aureus strains evolving in patients under treatment. We detected the rapid emergence of tolerance mutations, followed by the emergence of resistance, despite the combination treatment. Evolution experiments on the clinical strains in vitro revealed a new way by which tolerance promotes the evolution of resistance under combination treatments. Further experiments under different antibiotic classes reveal the generality of the effect. We conclude that tolerance is an important factor to consider in designing combination treatments that prevent the evolution of resistance.
Insights
Drug tolerance, not just resistance, accelerates the evolution of antibiotic resistance in Staphylococcus aureus. This finding is crucial for developing new combination therapies to combat bacterial infections effectively.
Area of Science:
- Microbiology
- Evolutionary Biology
- Pharmacology
Background:
- Drug combinations are standard for preventing antimicrobial resistance.
- The role of tolerance, a distinct survival mechanism, in combination therapy efficacy is poorly understood.
Purpose of the Study:
- To investigate the impact of tolerance on the evolution of resistance in Staphylococcus aureus under combination antibiotic treatment.
- To elucidate the mechanisms by which tolerance promotes resistance development.
Main Methods:
- Monitoring Staphylococcus aureus strains from patients undergoing combination treatment.
- Conducting in vitro evolution experiments with clinical isolates.
- Testing the effect across different antibiotic classes.
Main Results:
- Tolerance mutations emerged rapidly in patients, preceding resistance development despite combination therapy.
- In vitro experiments demonstrated that tolerance facilitates the evolution of resistance under combination treatments.
- The observed effect of tolerance was consistent across various antibiotic classes.
Conclusions:
- Tolerance is a significant factor that can accelerate the evolution of resistance, even with combination therapies.
- Future combination treatment strategies must account for tolerance to effectively prevent resistance.
- Understanding tolerance mechanisms is vital for designing more robust antimicrobial therapies.
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