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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
Analysis of the DOK1 gene in breast cancer
Esin Tuna1, Yeliz Emine Ersoy2, Pelin Bulut1
1Department of Medical Biology, Cerrahpasa Medical Faculty, Istanbul University-Cerrahpasa, Kocamustafapasa, 34098, Istanbul, Turkey.
Abstract:
Breast cancer, which is the most common type of cancer among women, is a heterogenous disease. It results from progressive accumulation of genetic and epigenetic alterations in different genes. The Dok1 protein has been identified as the major substrate of protein tyrosine kinases in hematopoietic cells. It is considered as a tumor suppressor due to the reports which describe its inhibitory effect on major oncogenic signaling pathways such as Mek/Erk/PI3k/Akt and Wnt/β-catenin. In this study, we investigated the mutation frequency of the DOK1 gene in 118 breast tumors using Sanger sequencing and DOK1 mRNA expression level in 63 breast cancer samples using qRT-PCR methods. Although the mutation frequency was low DOK1 mRNA expression levels were significantly reduced (63.5%) in the tumors compared to adjacent non-cancerous tissue. We also correlated expression changes with clinicopathological characteristics. Low mRNA levels correlated with age (p = 0.01) and c-erbB-2 (p = 0.05). In most of the previous reports, down-regulation of DOK1 mRNA expression has been associated with promoter methylation. We identified four different coding sequence alterations in 5.1% (6/118) of the tumor samples. However, all of these alterations were located in the functional domains of the protein. Therefore, these mutations may affect the function and/or cellular localization of the protein and contribute to cancer progression by this way. In conclusion our data indicate that DOK1 acts as a tumor suppressor in breast cancer and association of Dok1 with the c-erbB-2 mediated mechanism of action in breast cancer needs to be investigated.
Insights
Dok1 protein acts as a tumor suppressor in breast cancer. Its expression is significantly reduced in tumors, and mutations may impact its function, contributing to cancer progression.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Breast cancer is a heterogeneous disease driven by genetic and epigenetic alterations.
- Dok1 protein, a tumor suppressor, inhibits key oncogenic pathways like Mek/Erk/PI3k/Akt and Wnt/β-catenin.
- Down-regulation of Dok1 is often linked to promoter methylation in various cancers.
Purpose of the Study:
- To investigate the mutation frequency of the DOK1 gene in breast tumors.
- To assess DOK1 mRNA expression levels in breast cancer samples.
- To correlate DOK1 expression changes with clinicopathological characteristics.
Main Methods:
- Sanger sequencing was used to analyze DOK1 gene mutations in 118 breast tumors.
- Quantitative reverse transcription PCR (qRT-PCR) was employed to measure DOK1 mRNA expression in 63 breast cancer samples.
- Statistical analysis correlated DOK1 expression with patient age and c-erbB-2 status.
Main Results:
- DOK1 mRNA expression was significantly reduced (63.5%) in breast tumors compared to adjacent non-cancerous tissue.
- Low DOK1 mRNA levels correlated with patient age (p=0.01) and c-erbB-2 positivity (p=0.05).
- Four coding sequence alterations in DOK1 were identified in 5.1% of tumors, located within functional domains.
Conclusions:
- Dok1 functions as a tumor suppressor in breast cancer.
- Reduced DOK1 expression, potentially due to mutations affecting protein function or localization, contributes to breast cancer progression.
- Further investigation into Dok1's association with c-erbB-2 signaling in breast cancer is warranted.
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