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Updated: Dec 31, 2025

A Strategy to Identify de Novo Mutations in Common Disorders such as Autism and Schizophrenia
Published on: June 15, 2011
Childhood-Onset Schizophrenia: A Systematic Overview of Its Genetic Heterogeneity From Classical Studies to the
Arnaud Fernandez1,2,3, Malgorzata Marta Drozd3, Susanne Thümmler1,2
1University Department of Child and Adolescent Psychiatry, Children's, Hospitals of NICE CHU-Lenval, Nice, France.
Insights
Childhood-onset schizophrenia (COS) involves genetic changes like copy number variations (CNVs) and single nucleotide variations (SNVs). Many genetic factors in COS overlap with autism spectrum disorder (ASD), suggesting shared developmental pathways.
Area of Science:
- Genetics and Neurodevelopmental Disorders
- Psychiatric Genetics
Background:
- Childhood-onset schizophrenia (COS) is a rare, severe psychiatric condition with onset before age 13, often co-occurring with other neurodevelopmental disorders like ASD.
- Genetic factors, including copy number variations (CNVs) and de novo single nucleotide variations (SNVs) in brain development genes, are implicated in COS.
Approach:
- A systematic literature review was conducted using PubMed with keywords related to early-onset schizophrenia and genetics.
- Studies were included if they reported on COS (onset < 13 years) and DNA-level variations (CNVs or SNVs).
Key Points:
- The review identified 66 CNVs and 31 SNVs associated with COS, affecting multiple chromosomes.
- Specific CNVs (e.g., 2p16.3, 3q29, 15q13.3, 22q11.21 deletions) and duplications (e.g., 16p11.2) showed higher frequency and clinical significance.
- The gene ATP1A3 (19q13.2) emerged as a strong candidate, with multiple SNVs found in different patients. Over 90% of CNVs in COS are also implicated in ASD.
Conclusions:
- COS exhibits significant genetic heterogeneity, with mutations distributed across various chromosomes.
- The substantial overlap in CNVs between COS and ASD suggests shared genetic underpinnings.
- Additional genetic variations and environmental factors may contribute to COS pathogenesis.
Abstract:
Childhood-onset schizophrenia (COS), a very rare and severe chronic psychiatric condition, is defined by an onset of positive symptoms (delusions, hallucinations and disorganized speech or behavior) before the age of 13. COS is associated with other neurodevelopmental disorders such as autism spectrum disorder (ASD) and attention deficit and hyperactivity disorder. Copy number variations (CNVs) represent well documented neurodevelopmental disorder risk factors and, recently, de novo single nucleotide variations (SNVs) in genes involved in brain development have also been implicated in the complex genetic architecture of COS. Here, we aim to review the genetic changes (CNVs and SNVs) reported for COS, going from previous studies to the whole genome sequencing era. We carried out a systematic review search in PubMed using the keywords "childhood(early)-onset schizophrenia(psychosis)" and "genetic(s) or gene(s) or genomic(s)" without language and date limitations. The main inclusion criteria are COS (onset before 13 years old) and all changes/variations at the DNA level (CNVs or SNVs). Thirty-six studies out of 205 met the inclusion criteria. Cytogenetic abnormalities (n = 72, including 66 CNVs) were identified in 16 autosomes and 2 sex chromosomes (X, Y), some with a higher frequency and clinical significance than others (e.g., 2p16.3, 3q29, 15q13.3, 22q11.21 deletions; 2p25.3, 3p25.3 and 16p11.2 duplications). Thirty-one single nucleotide mutations in genes principally involved in brain development and/or function have been found in 12 autosomes and one sex chromosome (X). We also describe five SNVs in X-linked genes inherited from a healthy mother, arguing for the X-linked recessive inheritance hypothesis. Moreover, ATP1A3 (19q13.2) is the only gene carrying more than one SNV in more than one patient, making it a strong candidate for COS. Mutations were distributed in various chromosomes illustrating the genetic heterogeneity of COS. More than 90% of CNVs involved in COS are also involved in ASD, supporting the idea that there may be genetic overlap between these disorders. Different mutations associated with COS are probably still unknown, and pathogenesis might also be explained by the association of different genetic variations (two or more CNVs or CNVs and SNVs) as well as association with early acquired brain lesions such as infection, hypoxia, or early childhood trauma.
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