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Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
Published on: April 11, 2016
Molecular profiling for precision cancer therapies
Eoghan R Malone1, Marc Oliva1, Peter J B Sabatini2
1Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Department of Medicine, University Avenue, University of Toronto, Toronto, Ontario, M5G 1Z5, Canada.
Abstract:
The number of druggable tumor-specific molecular aberrations has grown substantially in the past decade, with a significant survival benefit obtained from biomarker matching therapies in several cancer types. Molecular pathology has therefore become fundamental not only to inform on tumor diagnosis and prognosis but also to drive therapeutic decisions in daily practice. The introduction of next-generation sequencing technologies and the rising number of large-scale tumor molecular profiling programs across institutions worldwide have revolutionized the field of precision oncology. As comprehensive genomic analyses become increasingly available in both clinical and research settings, healthcare professionals are faced with the complex tasks of result interpretation and translation. This review summarizes the current and upcoming approaches to implement precision cancer medicine, highlighting the challenges and potential solutions to facilitate the interpretation and to maximize the clinical utility of molecular profiling results. We describe novel molecular characterization strategies beyond tumor DNA sequencing, such as transcriptomics, immunophenotyping, epigenetic profiling, and single-cell analyses. We also review current and potential applications of liquid biopsies to evaluate blood-based biomarkers, such as circulating tumor cells and circulating nucleic acids. Last, lessons learned from the existing limitations of genotype-derived therapies provide insights into ways to expand precision medicine beyond genomics.
Insights
Precision cancer medicine uses molecular profiling to match therapies, improving survival. This review explores advanced techniques and liquid biopsies to overcome interpretation challenges and expand precision oncology beyond genomics.
Area of Science:
- Oncology
- Genomics
- Molecular Pathology
Background:
- Druggable tumor molecular aberrations have increased, leading to survival benefits with biomarker-matched therapies.
- Molecular pathology is crucial for cancer diagnosis, prognosis, and therapeutic decisions.
- Next-generation sequencing and large-scale profiling have transformed precision oncology.
Purpose of the Study:
- To review current and future strategies for implementing precision cancer medicine.
- To highlight challenges and solutions for interpreting and utilizing molecular profiling results.
- To explore novel characterization methods and liquid biopsy applications.
Main Methods:
- Review of current and emerging precision cancer medicine approaches.
- Description of molecular characterization strategies beyond DNA sequencing (transcriptomics, immunophenotyping, epigenetics, single-cell analysis).
- Evaluation of liquid biopsy applications for blood-based biomarkers (circulating tumor cells, nucleic acids).
Main Results:
- Comprehensive genomic analyses are increasingly available, posing interpretation challenges.
- Novel molecular characterization strategies offer deeper insights into tumors.
- Liquid biopsies show potential for non-invasive biomarker evaluation.
Conclusions:
- Effective interpretation and translation of molecular profiling are key to maximizing clinical utility.
- Expanding precision medicine requires integrating multi-omic data and overcoming current limitations.
- Future directions involve leveraging advanced techniques and liquid biopsies for broader application.
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