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Protein Modifications in the RER01:26

Protein Modifications in the RER

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Modification of secretory and transmembrane proteins entering the rough ER begins in the ER lumen. These modifications aid in protein folding and stabilize the acquired tertiary structure. Protein modifications in the rough ER co-occur at different stages of protein folding.
Broadly, these modifications can be categorized into four main categories — glycosylation, formation of disulfide bonds, assembly of protein subunits, and specific proteolytic cleavages like removal of signal...
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Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
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Protein Folding01:22

Protein Folding

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Protein Folding01:25

Protein Folding

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Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
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Regulated Protein Degradation02:58

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It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
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Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

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ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
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Updated: Dec 30, 2025

Resin-Assisted Capture Coupled with Isobaric Tandem Mass Tag Labeling for Multiplexed Quantification of Protein Thiol Oxidation
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Spatial and temporal alterations in protein structure by EGF regulate cryptic cysteine oxidation.

Jessica B Behring1, Sjoerd van der Post1, Arshag D Mooradian1

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Epidermal growth factor receptor (EGFR) stimulation oxidizes cysteines, revealing new redox signaling mechanisms. Cryptic cysteine residues, exposed by protein changes, are unexpectedly regulated by EGF, expanding our understanding of cellular signaling networks.

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Area of Science:

  • Cellular signaling
  • Redox biology
  • Molecular mechanisms

Background:

  • Plasma membrane receptor tyrosine kinases (RTKs), like EGFR, generate reactive oxygen species (ROS) upon stimulation.
  • ROS oxidize cysteine residues in proteins, modulating downstream signaling pathways.
  • Spatial confinement of ROS is a known regulatory mechanism in redox signaling.

Purpose of the Study:

  • To identify additional mechanisms regulating cysteine oxidation by EGF stimulation.
  • To investigate the spatiotemporal patterns of cysteine oxidation induced by EGF.
  • To explore the role of protein conformation in redox regulation.

Main Methods:

  • Time-resolved quantification of cysteine oxidation in A431 cells upon EGF stimulation.
  • Analysis of protein crystal structures and molecular dynamics simulations.
  • Investigation of phosphorylation and nucleotide substrate flux in regulating cysteine exposure.

Main Results:

  • EGF stimulation significantly oxidized 51% of analyzed cysteine sites.
  • EGF induced distinct spatiotemporal patterns of cysteine oxidation, supporting spatial confinement models.
  • Cryptic cysteine residues, exposed by conformational changes, were found to be redox regulated via phosphorylation and nucleotide substrate flux.

Conclusions:

  • EGF-regulated redox signaling involves not only surface-accessible cysteines but also cryptic ones.
  • Protein conformational changes, influenced by phosphorylation and nucleotide binding, expose specific cryptic cysteines to redox regulation.
  • These findings suggest that the redox regulation of cryptic cysteines contextually defines cellular redox signaling networks, offering new insights into RTK signaling specificity.