Imidazole-Imidazole Hydrogen Bonding in the pH-Sensing Histidine Side Chains of Influenza A M2

Kumar Tekwani Movellan1, Melanie Wegstroth1, Kerstin Overkamp1

  • 1Department of NMR Based Structural Biology , Max Planck Institute for Biophysical Chemistry , Am Fassberg 11 , Göttingen 37077 , Germany.

Insights

Influenza A M2 channel histidine side chains form hydrogen bonds in their neutral state, influencing pH-dependent proton conduction essential for viral replication. This finding impacts understanding of M2 channel function and drug interactions.

Area of Science:

  • Structural biology
  • Virology
  • Biophysics

Background:

  • The influenza A M2 protein forms proton channels critical for viral uncoating.
  • Histidine side chain protonation states (pKa values) regulate M2 channel activity.
  • Previous models proposed water-associated or hydrogen-bonded histidine structures.

Purpose of the Study:

  • To investigate the structural arrangement of histidine side chains in the M2 channel conduction domain.
  • To determine the protonation state and interactions of histidine residues at physiological pH.
  • To elucidate the mechanism of pH-dependent proton conduction in the M2 channel.

Main Methods:

  • Utilized a conduction domain construct of the M2 protein reconstituted into lipid bilayers.
  • Employed solid-state Nuclear Magnetic Resonance (NMR) spectroscopy with 100 kHz magic-angle spinning.
  • Measured intermolecular 2hJNN coupling constants to probe hydrogen bonding interactions.

Main Results:

  • Observed that imidazole rings of histidine residues are hydrogen bonded even at pH 7.8 in the neutral charge state.
  • Detected an intermolecular 8.9 ± 0.3 Hz 2hJNN hydrogen bond between H37 Nε and Nδ.
  • This specific hydrogen bond interaction was absent in drug-bound M2 channel samples.

Conclusions:

  • Histidine residues in the M2 channel maintain a hydrogen-bonded quaternary structure at neutral pH.
  • This intrinsic hydrogen bonding influences the pKa values and pH-dependent proton conduction.
  • The observed interaction provides new insights into M2 channel gating and potential drug binding sites.

Related Concept Videos

Basicity of Heterocyclic Aromatic Amines01:25

Basicity of Heterocyclic Aromatic Amines

Heterocyclic amines, where the N atom is a part of an alicyclic system, are similar in basicity to alkylamines. Interestingly, the heterocyclic amine having a nitrogen atom as part of an aromatic ring has much less basicity than its corresponding alicyclic counterpart. For this reason, as presented in Figure 1, piperidine (pKb = 2.8) is significantly more basic than pyridine (pKb = 8.8).
6.8K
Hydrogen Bonds01:04

Hydrogen Bonds

A hydrogen bond is formed when a weakly positive hydrogen atom already bonded to one electronegative atom (for example, the oxygen in the water molecule) is attracted to another electronegative atom from another polar molecule, such as water (H2O), hydrogen fluoride (HF), or ammonia (NH3). The huge electronegativity difference between the H atom (2.1) and the atom to which it is bonded (4.0 for an F atom, 3.5 for an O atom, or 3.0 for an N atom), combined with the very small size of an H atom...
12.8K
Molecular Geometry and Dipole Moments02:36

Molecular Geometry and Dipole Moments

The VSEPR theory can be used to determine the electron pair geometries and molecular structures as follows:
17.5K
Structure of Amines01:19

Structure of Amines

The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are...
3.1K