Negative regulation of RAF kinase activity by ATP is overcome by 14-3-3-induced dimerization

Nicholas P D Liau1, Timothy J Wendorff1, John G Quinn2

  • 1Department of Structural Biology, Genentech Inc., South San Francisco, USA.

Insights

Adenosine triphosphate (ATP) normally inhibits RAF kinase-domain (RAFKD) dimers. This study reveals how BRAF-ATP interactions and 14-3-3 binding regulate RAF activity, offering insights into cancer mutations.

Area of Science:

  • Molecular Biology
  • Structural Biology
  • Cancer Research

Background:

  • The RAS-RAF-MEK-ERK signaling pathway is crucial in cell growth and frequently dysregulated in cancers.
  • Adenosine triphosphate (ATP) plays a key role in regulating RAF kinase activity by preventing dimer formation.

Purpose of the Study:

  • To elucidate the structural mechanisms by which ATP and 14-3-3 protein regulate BRAF kinase activity.
  • To understand how oncogenic BRAF mutations disrupt these regulatory mechanisms, leading to pathway activation.

Main Methods:

  • X-ray crystallography was used to determine the structures of human BRAF kinase-domain (BRAFKD) complexed with MEK and an ATP analog (AMP-PCP) at 2.9-Å resolution.
  • A second crystal structure of the BRAFKD-14-3-3 complex was determined at 2.5-Å resolution.

Main Results:

  • The BRAFKD-ATP analog structure revealed that ATP binding induces an inactive, monomeric BRAFKD conformation.
  • The BRAFKD-14-3-3 structure demonstrated that dimeric 14-3-3 protein promotes BRAFKD dimerization, thereby increasing kinase activity and overcoming ATP's inhibitory effect.
  • Oncogenic BRAF mutations appear to alter ATP interactions, lowering the threshold for RAF dimerization and pathway activation.

Conclusions:

  • This study provides a structural framework for understanding BRAF regulation by ATP and 14-3-3 protein.
  • The findings offer insights into the mechanisms of oncogenic BRAF mutations and suggest new strategies for developing targeted cancer therapies.

Related Concept Videos

MAPK Signaling Cascades01:07

MAPK Signaling Cascades

Mitogen-activated protein kinase, or MAPK pathway, activates three sequential kinases to regulate cellular responses such as proliferation, differentiation, survival, and apoptosis. The canonical MAPK pathway starts with a mitogen or growth factor binding to an RTK. The activated RTKs stimulate Ras, which recruits Raf or MAP3 Kinase (MAPKKK), the first kinase of the MAPK signaling cascade. Raf further phosphorylates and activates MEK or MAP2 Kinases (MAPKK), which in turn phosphorylates MAP...
7.7K
The Ras Gene02:38

The Ras Gene

The Ras-gene-encoded proteins are regulators of signaling pathways controlling cell proliferation, differentiation, or cell survival. The Ras-gene family in humans constitutes three primary members—the HRas, NRas, and KRas. These genes code for four functionally distinct yet closely related proteins—the HRas, NRas, KRas4A, and KRas4B. The involvement of mutant Ras genes in human cancer was first discovered in 1982 and is among the most common causes of human tumorigenesis.
Ras is a...
6.9K
Small GTPases - Ras and Rho01:24

Small GTPases - Ras and Rho

Ras and Rho are small monomeric GTPases that act downstream of receptor tyrosine kinase (RTK) and regulate various cellular processes. These GTPases switch between active and inactive states by binding to guanine nucleotides.
Three regulatory proteins control their activity:
5.1K
PI3K/mTOR/AKT Signaling Pathway01:22

PI3K/mTOR/AKT Signaling Pathway

The mammalian target of rapamycin  (mTOR) is a serine/threonine kinase that regulates growth, proliferation, and cell survival in response to hormones, growth factors, or nutrient availability. This kinase exists in two structurally and functionally distinct forms: mTOR complex 1  (mTORC1) and mTOR complex 2  (mTORC2). The first form (mTORC1) is composed of a rapamycin-sensitive Raptor and proline-rich Akt substrate, PRAS40. In contrast,  mTORC2 consists of a...
5.1K
Receptor Tyrosine Kinases01:26

Receptor Tyrosine Kinases

Receptor tyrosine kinases or RTKs are membrane-bound receptors that phosphorylate specific tyrosine on protein substrates. RTKs regulate cellular growth, differentiation, survival, and migration. They contain an extracellular ligand binding domain, a transmembrane domain, and a cytosolic tail with intrinsic kinase activity. Several extracellular signaling molecules activate RTKs in one or more ways and relay the signal downstream. Ligands such as platelet-derived growth factor (PDGF) or...
17.5K
Amplifying Signals via Enzymatic Cascade01:22

Amplifying Signals via Enzymatic Cascade

When a ligand binds to a cell-surface receptor, the receptor's intracellular domain changes shape, which may either activate its enzyme function or allow its binding to other molecules. The initial signal is amplified by most signal transduction pathways. This means that a single ligand molecule can activate multiple molecules of a downstream target. Proteins that relay a signal are most commonly phosphorylated at one or more sites, activating or inactivating the protein. Kinases catalyze...
16.8K