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Updated: Dec 29, 2025

Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Negative regulation of RAF kinase activity by ATP is overcome by 14-3-3-induced dimerization
Nicholas P D Liau1, Timothy J Wendorff1, John G Quinn2
1Department of Structural Biology, Genentech Inc., South San Francisco, USA.
Abstract:
The RAS-RAF-MEK-ERK signaling axis is frequently activated in human cancers. Physiological concentrations of ATP prevent formation of RAF kinase-domain (RAFKD) dimers that are critical for activity. Here we present a 2.9-Å-resolution crystal structure of human BRAFKD in complex with MEK and the ATP analog AMP-PCP, revealing interactions between BRAF and ATP that induce an inactive, monomeric conformation of BRAFKD. We also determine how 14-3-3 relieves the negative regulatory effect of ATP through a 2.5-Å-resolution crystal structure of the BRAFKD-14-3-3 complex, in which dimeric 14-3-3 enforces a dimeric BRAFKD assembly to increase BRAF activity. Our data suggest that most oncogenic BRAF mutations alter interactions with ATP and counteract the negative effects of ATP binding by lowering the threshold for RAF dimerization and pathway activation. Our study establishes a framework for rationalizing oncogenic BRAF mutations and provides new avenues for improved RAF-inhibitor discovery.
Insights
Adenosine triphosphate (ATP) normally inhibits RAF kinase-domain (RAFKD) dimers. This study reveals how BRAF-ATP interactions and 14-3-3 binding regulate RAF activity, offering insights into cancer mutations.
Area of Science:
- Molecular Biology
- Structural Biology
- Cancer Research
Background:
- The RAS-RAF-MEK-ERK signaling pathway is crucial in cell growth and frequently dysregulated in cancers.
- Adenosine triphosphate (ATP) plays a key role in regulating RAF kinase activity by preventing dimer formation.
Purpose of the Study:
- To elucidate the structural mechanisms by which ATP and 14-3-3 protein regulate BRAF kinase activity.
- To understand how oncogenic BRAF mutations disrupt these regulatory mechanisms, leading to pathway activation.
Main Methods:
- X-ray crystallography was used to determine the structures of human BRAF kinase-domain (BRAFKD) complexed with MEK and an ATP analog (AMP-PCP) at 2.9-Å resolution.
- A second crystal structure of the BRAFKD-14-3-3 complex was determined at 2.5-Å resolution.
Main Results:
- The BRAFKD-ATP analog structure revealed that ATP binding induces an inactive, monomeric BRAFKD conformation.
- The BRAFKD-14-3-3 structure demonstrated that dimeric 14-3-3 protein promotes BRAFKD dimerization, thereby increasing kinase activity and overcoming ATP's inhibitory effect.
- Oncogenic BRAF mutations appear to alter ATP interactions, lowering the threshold for RAF dimerization and pathway activation.
Conclusions:
- This study provides a structural framework for understanding BRAF regulation by ATP and 14-3-3 protein.
- The findings offer insights into the mechanisms of oncogenic BRAF mutations and suggest new strategies for developing targeted cancer therapies.
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