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Updated: Dec 29, 2025

Improvement of Bacillus subtilis Spore Enumeration and Label Analysis in Flow Cytometry
Published on: June 30, 2023
Development of fungal spore staining methods for flow cytometric quantification and their application in
Gang Wen1, Ruihua Cao1, Qiqi Wan1
1Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an, 710055, PR China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, PR China.
Abstract:
Fungal contamination in drinking water has been becoming a hot topic. The routine enumeration method of fungal spores is heterotrophic plate counts (HPC). However, this method is time-consuming and labor-intensive and there is also the difficulty of enumerating viable but non-culturable cells. In this study, a rapid, simple and accurate method for quantifying fungal spores and discriminating their viability in water was established using flow cytometry (FCM) combined with fluorescence dyes. The optimal staining conditions are as follows: spores suspensions are sonicated at 495 W for 5 min as pretreatment, and then 10 μL of SYBR Green I (100×) and 30 mM Ethylene diamine tetraacetic acid are added to a 500 μL water sample, which incubate at 35 °C for 20 min in dark. The concentration of fungal spores measured by FCM was highly correlated with HPC results and microscope observations, with correlation coefficient of 0.996 and 0.988, respectively. This staining method can be widely applied to the enumeration and viability evaluation of fungal spores. In addition, chlorine-based inactivation of three genera of fungal spores was assessed by plating and FCM. The result showed that all three genera of fungal spores lost culturability firstly and then membrane integrity decreased, preliminarily revealing the inactivation mechanism. The inactivation rate constants of membrane damage varied in the following order: chlorine dioxide > chlorine > chloramine. This study concluded that FCM is an appropriate and alternative tool to detect fungal spores' viability and can be used for evaluating the fungal inactivation by disinfectants.
Insights
A new flow cytometry (FCM) method accurately quantifies fungal spores in water, assessing viability and disinfectant inactivation. This rapid technique offers an alternative to traditional, time-consuming methods for monitoring drinking water quality.
Area of Science:
- Environmental microbiology
- Analytical chemistry
- Water quality assessment
Background:
- Fungal contamination in drinking water is a growing concern.
- Traditional methods like heterotrophic plate counts (HPC) are slow, labor-intensive, and cannot detect viable but non-culturable fungi.
- Accurate enumeration and viability assessment of fungal spores are crucial for water safety.
Purpose of the Study:
- To develop a rapid, simple, and accurate method for quantifying fungal spores in water.
- To discriminate the viability of fungal spores using flow cytometry (FCM).
- To evaluate the inactivation of fungal spores by chlorine-based disinfectants.
Main Methods:
- Established an optimal staining protocol using SYBR Green I and Ethylene diamine tetraacetic acid (EDTA) for FCM analysis.
- Pretreated spore suspensions with sonication.
- Validated the FCM method against heterotrophic plate counts (HPC) and microscope observations.
- Assessed fungal spore inactivation kinetics using FCM and plating after exposure to chlorine-based disinfectants.
Main Results:
- The FCM method showed high correlation with HPC (R=0.996) and microscopy (R=0.988).
- Optimal staining involved sonication, SYBR Green I, EDTA, incubation at 35°C for 20 min.
- Fungal spores lost culturability before membrane integrity decreased during disinfection.
- Inactivation rates followed the order: chlorine dioxide > chlorine > chloramine.
Conclusions:
- Flow cytometry (FCM) provides an accurate and efficient alternative for enumerating fungal spores and assessing their viability in water.
- The developed FCM method is suitable for evaluating the efficacy of disinfectants against fungal spores.
- This technique aids in ensuring the safety of drinking water by monitoring fungal contamination and disinfection effectiveness.
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