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Updated: Dec 29, 2025

Constructing Mutants in Serotype 1 Streptococcus pneumoniae strain 519/43
Published on: September 11, 2020
Reduced In Vitro Susceptibility of Streptococcus pyogenes to β-Lactam Antibiotics Associated with Mutations in the
James M Musser1,2,3, Stephen B Beres4,2, Luchang Zhu4,2
1Center for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute and Houston Methodist Hospital, Houston, Texas, USA jmmusser@houstonmethodist.org.
Abstract:
Recently, two related Streptococcus pyogenes strains with reduced susceptibility to ampicillin, amoxicillin, and cefotaxime, antibiotics commonly used to treat S. pyogenes infections, were reported. The two strains had the same nonsynonymous (amino acid-substituting) mutation in the pbp2x gene, encoding penicillin-binding protein 2X (PBP2X). This concerning report led us to investigate our library of 7,025 genome sequences of type emm1, emm28, and emm89S. pyogenes clinical strains recovered from intercontinental sources for mutations in pbp2x We identified 137 strains that, combined, had 37 nonsynonymous mutations in 36 codons in pbp2x Although to a lesser magnitude than the two previously published isolates, many of our strains had decreased susceptibility in vitro to multiple beta-lactam antibiotics. Many pbp2x mutations were found only in single strains, but 16 groups of two or more isolates of the same emm type had an identical amino acid replacement. Phylogenetic analysis showed that, with one exception, strains of the same emm type with the same amino acid replacement were clonally related by descent. This finding indicates that strains with some amino acid changes in PBP2X can successfully spread to new human hosts and cause invasive infections. Mapping of the amino acid changes onto a three-dimensional structure of the related Streptococcus pneumoniae PBP2X suggests that some substitutions are located in regions functionally important in related pathogenic bacterial species. Decreased beta-lactam susceptibility is geographically widespread in strains of numerically common emm gene subtypes. Enhanced surveillance and further epidemiological and molecular genetic study of this potential emergent antimicrobial problem are warranted.
Insights
Mutations in the pbp2x gene of Streptococcus pyogenes are linked to reduced susceptibility to common antibiotics like ampicillin. These genetic changes are widespread and may indicate an emerging antimicrobial resistance problem requiring further study.
Area of Science:
- Microbiology
- Genetics
- Antimicrobial Resistance
Background:
- Emerging resistance to beta-lactam antibiotics in *Streptococcus pyogenes* is a growing public health concern.
- Specific mutations in the *pbp2x* gene have been linked to reduced antibiotic susceptibility in *S. pyogenes*.
Purpose of the Study:
- To investigate the prevalence and characteristics of *pbp2x* mutations in a large collection of *S. pyogenes* clinical strains.
- To assess the impact of these mutations on *in vitro* susceptibility to beta-lactam antibiotics.
- To understand the epidemiological and evolutionary implications of *pbp2x* mutations in *S. pyogenes*.
Main Methods:
- Genomic sequencing of 7,025 *S. pyogenes* clinical strains (*emm1*, *emm28*, *emm89* types).
- Identification and analysis of nonsynonymous mutations in the *pbp2x* gene.
- Phenotypic testing of antibiotic susceptibility (*in vitro*).
- Phylogenetic analysis to determine clonal relatedness.
- Structural mapping of mutations onto *Streptococcus pneumoniae* PBP2X.
Main Results:
- 137 strains harbored 37 distinct nonsynonymous mutations in *pbp2x* across 36 codons.
- Many strains exhibited decreased susceptibility to multiple beta-lactam antibiotics.
- Identical amino acid replacements in *pbp2x* were found in clonally related strains of the same *emm* type.
- Mutations were geographically widespread among common *emm* subtypes.
Conclusions:
- Nonsynonymous mutations in *pbp2x* are prevalent in *S. pyogenes* and associated with reduced beta-lactam susceptibility.
- These mutations can confer a selective advantage, facilitating the spread of resistant strains.
- The findings highlight an emergent antimicrobial resistance issue requiring enhanced surveillance and further investigation.
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