Related Experiment Video
Updated: Dec 29, 2025

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
Published on: July 16, 2017
Evaluation and Selection of Dynamic Protein Structural Ensembles with CoNSEnsX.
Dániel Dudola1, Bertalan Kovács1, Zoltán Gáspári2
1Information Technology and Bionics, Pázmány Péter Catholic University, Budapest, Hungary.
Abstract:
Understanding protein function at atomistic detail is not possible without accounting for the internal dynamics of these molecules. Ensemble-based models are based on the premise that single conformers cannot account for all experimental observations on the given molecule. Rather, a suitable set of structures, representing the internal dynamics of the protein at a given timescale, are necessary to achieve correspondence to measurements. CoNSEnsX+ is a service specifically designed for the investigation of such ensembles for compliance with NMR-derived parameters. In contrast to common structure evaluation tools, all parameters are treated as an average over the ensemble, if are not themselves an ensemble property like order parameters. CoNSEnsX+ is also capable of selecting a sub-ensemble with increased correspondence to a set of user-defined experimental parameters. CoNSEnsX+ is available as a web server at http://consensx.itk.ppke.hu , and the full Python source code is available on GitHub.
More Related Videos
08:49Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
05:08Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
Published on: July 8, 2025
Related Concept Videos
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
Protein Complexes with Interchangeable Parts
Protein Folding
Protein Folding
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Organization
The primary structure of a protein is its amino acid sequence....
Protein and Protein Structures