Related Experiment Video
Updated: Dec 29, 2025

Identification of Small Molecule-binding Proteins in a Native Cellular Environment by Live-cell Photoaffinity Labeling
Published on: September 20, 2016
Chemical reactivity theory (CRT) study of small drug-like biologically active molecules
1Bioinformatics, CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.
Abstract:
New biochemical screening and design based technology are used to identify the small molecules in targeting RNA. These approaches has develop potential drug like small molecule for RNA-targeted therapeutics. Chemical Reactivity Theory (CRT) is used to study these drug-like, biologically active small molecules that target RNA. Twenty two small molecules based on structure (1-6), information (7-9), fragment (10-19), small molecular microarrays (20), and use of phenotypic assays (21-22) are selected for the studies of several DFT-based global reactivity and local reactivity descriptors to provide complete explanation for the reactivity of these complexes by chemical reactivity method. Higher HOMO-LUMO gap indicated the structural stability for the studied complexes. The complexes reflect greater thermodynamic stability. Further the results predicted that high aromaticity and hardness are measures of high stability and low reactivity for the studied complexes. It was observed that a good, more reactive, nucleophile can be described by a lower value of μ, ω while a good electrophile can be described by a high value of μ, ω. TDDFT results predicted that few complexes can be used as fluorescent biomarkers as their emission wavelength lies in the visible region. Communicated by Ramaswamy H. Sarma.
More Related Videos
Related Concept Videos
Structure-Activity Relationships and Drug Design
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
Drug-Receptor Bonds
In...
Principles of Drug Action
Drugs can be agonists or antagonists. Like the endogenous ligands, agonists always bind and activate the target to produce a cellular response. Agonist binding induces a conformational change which in turn...
Drug-Receptor Interactions
Several parameters, such as the drug's affinity for its receptor and its efficacy, which is its ability to activate the receptor, determine the drug's effect on the tissue....
Pharmacodynamics: Overview and Principles
Most drugs' effects result from their interactions with drug receptors or targets within the body. These interactions trigger specific responses at the cellular or systemic level. Drug receptors can be found on the surfaces of cells or...
The Two-State Receptor Model
The binding affinity of a drug determines its interaction with...

