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Updated: Dec 29, 2025

Multi-target Parallel Processing Approach for Gene-to-structure Determination of the Influenza Polymerase PB2 Subunit
Published on: June 28, 2013
Atomic structures of closed and open influenza B M2 proton channel reveal the conduction mechanism
Venkata S Mandala1, Alexander R Loftis1, Alexander A Shcherbakov1
1Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.
Abstract:
The influenza B M2 (BM2) proton channel is activated by acidic pH to mediate virus uncoating. Unlike influenza A M2 (AM2), which conducts protons with strong inward rectification, BM2 conducts protons both inward and outward. Here we report 1.4- and 1.5-Å solid-state NMR structures of the transmembrane domain of the closed and open BM2 channels in a phospholipid environment. Upon activation, the transmembrane helices increase the tilt angle by 6° and the average pore diameter enlarges by 2.1 Å. BM2 thus undergoes a scissor motion for activation, which differs from the alternating-access motion of AM2. These results indicate that asymmetric proton conduction requires a backbone hinge motion, whereas bidirectional conduction is achieved by a symmetric scissor motion. The proton-selective histidine and gating tryptophan in the open BM2 reorient on the microsecond timescale, similar to AM2, indicating that side chain dynamics are the essential driver of proton shuttling.
Insights
The influenza B M2 (BM2) channel
Area of Science:
- Structural biology
- Virology
- Biophysics
Background:
- Influenza B virus relies on its M2 proton channel (BM2) for uncoating.
- BM2 facilitates viral entry, unlike the related influenza A M2 (AM2) channel.
- BM2 exhibits bidirectional proton conduction, distinct from AM2's rectification.
Purpose of the Study:
- To elucidate the structural mechanism of BM2 channel activation.
- To understand the molecular basis of BM2's bidirectional proton transport.
- To compare BM2 activation with the known mechanism of AM2.
Main Methods:
- Solid-state Nuclear Magnetic Resonance (ssNMR) spectroscopy.
- Determination of high-resolution structures (1.4- and 1.5-Å) of BM2 transmembrane domain.
- Analysis of channel conformational changes in a phospholipid environment.
Main Results:
- Revealed distinct closed and open states of the BM2 channel.
- Identified a 6° increase in transmembrane helix tilt angle upon activation.
- Observed a 2.1 Å increase in average pore diameter, indicating a scissor-like motion.
- Demonstrated that BM2 activation involves a symmetric scissor motion, contrasting AM2's alternating-access mechanism.
Conclusions:
- BM2 activation utilizes a scissor motion, enabling bidirectional proton flow.
- Asymmetric proton conduction relies on backbone hinge motion, while bidirectional flow uses symmetric scissor motion.
- Side chain dynamics of histidine and tryptophan are crucial for proton shuttling in BM2, similar to AM2.
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