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Published on: September 4, 2016
Genomic characterization of Parengyodontium americanum sp. nov
Marcus de M Teixeira1, Anna Muszewska2, Jason Travis3
1Division of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, USA; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA; Faculty of Medicine, University of Brasília, Brasília-DF, Brazil.
Abstract:
Modern genome analysis and phylogenomic methods have increased the number of fungal species, as well as enhanced appreciation of the degree of diversity within the fungal kingdom. In this context, we describe a new Parengyodontium species, P. americanum, which is phylogenetically related to the opportunistic human fungal pathogen P. album. Five unusual fungal isolates were recovered from five unique and confirmed coccidioidomycosis patients, and these isolates were subsequently submitted to detailed molecular and morphological identification procedures to determine identity. Molecular and morphological diagnostic analyses showed that the isolates belong to the Cordycipitaceae. Subsequently, three representative genomes were sequenced and annotated, and a new species, P. americanum, was identified. Using various genomic analyses, gene family expansions related to novel compounds and potential for ability to grow in diverse habitats are predicted. A general description of the genomic composition of this newly described species and comparison of genome content with Beauveria bassiana, Isaria fumosorosea and Cordyceps militaris shows a shared core genome of 6371 genes, and 148 genes that appear to be specific for P. americanum. This work provides the framework for future investigations of this interesting fungal species.
Insights
A new fungal species, Parengyodontium americanum, was identified from coccidioidomycosis patients. Genomic analysis revealed unique genes and potential for diverse habitats, expanding fungal diversity knowledge.
Area of Science:
- Mycology
- Genomics
- Fungal Diversity
Background:
- Modern genomic and phylogenomic methods have significantly expanded the understanding of fungal species and kingdom diversity.
- The opportunistic human fungal pathogen Parengyodontium album is a known species in this genus.
Purpose of the Study:
- To describe a novel Parengyodontium species identified from clinical isolates.
- To conduct detailed molecular and morphological analyses to determine the identity of unusual fungal isolates.
- To perform whole-genome sequencing and comparative genomics for the newly identified species.
Main Methods:
- Isolation and identification of fungal species from coccidioidomycosis patients.
- Molecular identification using phylogenetic analyses.
- Morphological characterization.
- Whole-genome sequencing and annotation of three representative isolates.
- Comparative genomic analysis with related fungal species.
Main Results:
- Five unusual fungal isolates were recovered from coccidioidomycosis patients.
- Molecular and morphological analyses confirmed the isolates belong to the Cordycipitaceae family.
- A new species, Parengyodontium americanum, was identified based on genomic and morphological data.
- Genomic analysis predicted gene family expansions related to novel compounds and adaptation to diverse habitats.
- Comparison with Beauveria bassiana, Isaria fumosorosea, and Cordyceps militaris revealed a shared core genome and 148 genes specific to P. americanum.
Conclusions:
- Parengyodontium americanum is a newly described fungal species.
- The genomic insights into P. americanum provide a foundation for future research into its biology and potential ecological roles.
- This discovery contributes to the growing appreciation of fungal diversity and the identification of novel species.
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