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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Pharmacological screening and transcriptomic functional analyses identify a synergistic interaction between dasatinib
Verónica Corrales-Sánchez1, María Del Mar Noblejas-López1,2, Cristina Nieto-Jiménez1,2
1Translational Research Unit, Albacete University Hospital, Albacete, Spain.
Abstract:
Identification of druggable vulnerabilities is a main objective in triple-negative breast cancer (TNBC), where no curative therapies exist. Gene set enrichment analyses (GSEA) and a pharmacological evaluation using a library of compounds were used to select potential druggable combinations. MTT and studies with semi-solid media were performed to explore the activity of the combinations. TNBC cell lines (MDAMB-231, BT549, HS-578T and HCC3153) and an additional panel of 16 cell lines were used to assess the activity of the two compounds. Flow cytometry experiments and biochemical studies were also performed to explore the mechanism of action. GSEA were performed using several data sets (GSE21422, GSE26910, GSE3744, GSE65194 and GSE42568), and more than 35 compounds against the identified functions were evaluated to discover druggable opportunities. Analyses done with the Chou and Talalay algorithm confirmed the synergy of dasatinib and olaparib. The combination of both agents significantly induced apoptosis in a caspase-dependent manner and revealed a pleotropic effect on cell cycle: Dasatinib arrested cells in G0/G1 and olaparib in G2/M. Dasatinib inhibited pChk1 and induced DNA damage measured by pH2AX, and olaparib increased pH3. Finally, the effect of the combination was also evaluated in a panel of 18 cell lines representative of the most frequent solid tumours, observing a particularly synergism in ovarian cancer. Breast cancer, triple negative, dasatinib, olaparib, screening.
Insights
This study identified that combining dasatinib and olaparib shows significant synergy against triple-negative breast cancer (TNBC) cells. This drug combination induces apoptosis and cell cycle arrest, offering a promising new therapeutic strategy for TNBC.
Area of Science:
- Oncology
- Pharmacology
- Molecular Biology
Background:
- Triple-negative breast cancer (TNBC) lacks targeted therapies, necessitating the identification of novel druggable vulnerabilities.
- Gene set enrichment analysis (GSEA) and compound screening are key strategies for discovering new therapeutic combinations.
Purpose of the Study:
- To identify and evaluate synergistic drug combinations for treating triple-negative breast cancer.
- To investigate the mechanism of action of promising drug combinations.
Main Methods:
- Utilized GSEA with multiple datasets (GSE21422, GSE26910, GSE3744, GSE65194, GSE42568) to identify therapeutic targets.
- Screened over 35 compounds and evaluated combinations using MTT assays, semi-solid media studies, and Chou and Talalay algorithm for synergy.
- Performed flow cytometry and biochemical assays to elucidate the mechanism of action, including apoptosis and cell cycle analysis.
Main Results:
- The combination of dasatinib and olaparib demonstrated significant synergy in TNBC cell lines (MDAMB-231, BT549, HS-578T, HCC3153) and a broader panel of 18 solid tumor cell lines.
- This combination induced caspase-dependent apoptosis and exhibited pleiotropic cell cycle effects: dasatinib caused G0/G1 arrest, while olaparib induced G2/M arrest.
- Dasatinib inhibited pChk1 and increased DNA damage (pH2AX), whereas olaparib elevated pH3, indicating distinct molecular impacts.
Conclusions:
- Dasatinib and olaparib combination represents a potent synergistic therapeutic strategy for triple-negative breast cancer.
- The observed synergy involves inducing apoptosis and distinct cell cycle arrests, offering a novel approach for TNBC treatment.
- This combination also showed particular synergism in ovarian cancer, suggesting broader applicability in solid tumors.
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