Related Experiment Video
Updated: Dec 28, 2025

Probiotic Studies in Neonatal Mice Using Gavage
Published on: January 27, 2019
Microbiome of the first stool after birth and infantile colic
Katja Korpela1, Marjo Renko2,3, Niko Paalanne4,2
1PEDEGO Research Unit and Medical Research Centre Oulu, University of Oulu, Oulu, Finland. katja.korpela@oulu.fi.
Insights
The first stool microbiome composition in newborns is linked to infantile colic. Lower levels of Lactobacillus and Firmicutes in the first stool may predict colic development, suggesting early gut health impacts infant well-being.
Area of Science:
- Microbiome research
- Pediatric health
- Gut-brain axis
Background:
- The first stool microbiome is diverse but its clinical significance is unknown.
- Infantile colic has been previously linked to gut microbiome composition.
Purpose of the Study:
- To investigate the association between the first stool microbiome and the development of infantile colic.
- To determine if early microbiome markers can predict infantile colic.
Main Methods:
- Prospective, population-based cohort study of 212 newborns.
- Next-generation sequencing of the bacterial 16S rRNA gene was used to analyze the first stool microbiome.
- Random forest algorithm was employed to classify newborns based on microbiome data.
Main Results:
- Newborns who developed infantile colic (n=19) showed a lower relative abundance of Lactobacillus and Firmicutes in their first stool compared to healthy infants (n=139).
- The microbiome data, analyzed by a random forest algorithm, could classify newborns with subsequent colic with an area under the curve of 0.66 (P < 0.001).
Conclusions:
- The microbiome of the first-pass meconium is associated with subsequent infantile colic.
- These findings suggest that the pathogenesis of infantile colic is closely related to the intestinal microbiome at birth.
Background:
Recent studies have shown a diverse microbiome in the first stool after birth. The clinical significance of the microbiome of the first stool is not known. Infantile colic has earlier been associated with the composition of the intestinal microbiome.
Methods:
We set out to test whether the microbiome of the first stool is associated with subsequent infantile colic in a prospective, population-based cohort study of 212 consecutive newborn infants. We used next-generation sequencing of the bacterial 16S rRNA gene.
Results:
The newborns who later developed infantile colic (n = 19) had a lower relative abundance of the genus Lactobacillus and the phylum Firmicutes in the first stool than those who remained healthy (n = 139). By using all microbiome data, random forest algorithm classified newborn with subsequent colic and those who remained healthy with area under the curve of 0.66 (SD 0.03) as compared to that of shuffled samples (P value <0.001).
Conclusions:
In this prospective, population-based study, the microbiome of the first-pass meconium was associated with subsequent infantile colic. Our results suggest that the pathogenesis of infantile colic is closely related to the intestinal microbiome at birth.
More Related Videos
08:05Guided Protocol for Fecal Microbial Characterization by 16S rRNA-Amplicon Sequencing
Published on: March 19, 2018
09:12Assessing Cellular Stress and Inflammation in Discrete Oxytocin-secreting Brain Nuclei in the Neonatal Rat Before and After First Colostrum Feeding
Published on: November 14, 2018
Related Concept Videos
Anatomy of the Intestines
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...
Bacterial Flora of the Large Intestine
The normal gut flora of the colon plays a critical role in generating essential vitamins such as vitamins K, B5, and B7.
Irritable Bowel Syndrome I: Introduction
IBS is a chronic condition that can persist over a long period or recur frequently.
The pathogenesis of IBS involves a complex interplay of the following factors:
Altered...
Assessment of the Rectum and Anus
Rectal Inspection
Begin by inspecting the perianal and anal areas for color, texture, rashes,...
What is Monogastric Digestion?