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Updated: Dec 28, 2025

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Microhabitat contributes to microgeographic divergence in threespine stickleback.

Meghan F Maciejewski1, Cynthia Jiang2,3, Yoel E Stuart2,4

  • 1Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut, 06269.

Evolution; International Journal of Organic Evolution
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Summary

Microgeographic variation in threespine stickleback (Gasterosteus aculeatus) challenges migration-selection balance theory. Morphological differences within populations suggest habitat-specific selection, not just gene flow, drives divergence.

Keywords:
Gasterosteus aculeatusdispersal neighborhoodmigration-selection balance

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Area of Science:

  • Evolutionary Biology
  • Ecology
  • Genetics

Background:

  • Migration-selection balance theory predicts limited divergence at small spatial scales due to gene flow.
  • Classic examples suggest divergence can occur under strong selection, plasticity, or nonrandom dispersal.
  • Microgeographic variation is often assumed absent in well-mixed populations.

Purpose of the Study:

  • To investigate microgeographic morphological variation in threespine stickleback (Gasterosteus aculeatus) within lake and stream populations.
  • To test the assumption of well-mixed populations and identify factors contributing to within-population divergence.
  • To explore the role of microhabitat and genetic factors in microgeographic variation.

Main Methods:

  • Examined trap-to-trap morphological variation in 34 traits across 16 lake and 16 stream stickleback populations.
  • Assessed the influence of between-trap distance and microhabitat characteristics (depth, substrate) on morphological variance.
  • Investigated the association between microhabitat, genotype at specific loci, and genetic isolation by distance.

Main Results:

  • Significant morphological variation was observed among traps within populations for most traits.
  • Microhabitat characteristics and between-trap distance explained some of the within-population morphological variance.
  • Microhabitat was associated with genotype, but no genetic isolation by distance was detected, suggesting heritable habitat preferences.

Conclusions:

  • The assumption of well-mixed populations is untenable for threespine stickleback.
  • Microgeographic divergence can occur over small spatial scales despite strong gene flow.
  • Heritable habitat preferences may be a key mechanism driving microgeographic variation in stickleback populations.