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Updated: Dec 28, 2025

Following Cell-fate in E. coli After Infection by Phage Lambda
Published on: October 14, 2011
Phage liquid crystalline droplets form occlusive sheaths that encapsulate and protect infectious rod-shaped bacteria
Abul K Tarafder1,2, Andriko von Kügelgen1,2, Adam J Mellul3
1Sir William Dunn School of Pathology, University of Oxford, OX1 3RE Oxford, United Kingdom.
Abstract:
The opportunistic pathogen Pseudomonas aeruginosa is a major cause of antibiotic-tolerant infections in humans. P. aeruginosa evades antibiotics in bacterial biofilms by up-regulating expression of a symbiotic filamentous inoviral prophage, Pf4. We investigated the mechanism of phage-mediated antibiotic tolerance using biochemical reconstitution combined with structural biology and high-resolution cellular imaging. We resolved electron cryomicroscopy atomic structures of Pf4 with and without its linear single-stranded DNA genome, and studied Pf4 assembly into liquid crystalline droplets using optical microscopy and electron cryotomography. By biochemically replicating conditions necessary for antibiotic protection, we found that phage liquid crystalline droplets form phase-separated occlusive compartments around rod-shaped bacteria leading to increased bacterial survival. Encapsulation by these compartments was observed even when inanimate colloidal rods were used to mimic rod-shaped bacteria, suggesting that shape and size complementarity profoundly influences the process. Filamentous inoviruses are pervasive across prokaryotes, and in particular, several Gram-negative bacterial pathogens including Neisseria meningitidis, Vibrio cholerae, and Salmonella enterica harbor these prophages. We propose that biophysical occlusion mediated by secreted filamentous molecules such as Pf4 may be a general strategy of bacterial survival in harsh environments.
Insights
Pseudomonas aeruginosa uses filamentous phage Pf4 to form protective compartments, enhancing antibiotic tolerance. This phage-mediated biophysical occlusion offers a novel survival strategy for bacteria.
Area of Science:
- Microbiology
- Structural Biology
- Biophysics
Background:
- * *Pseudomonas aeruginosa* is an opportunistic pathogen causing antibiotic-tolerant infections.
- * Bacterial biofilms enable *P. aeruginosa* to evade antibiotics via filamentous phage Pf4.
- * The mechanism of phage-mediated antibiotic tolerance requires investigation.
Purpose of the Study:
- * To elucidate the mechanism of Pf4-mediated antibiotic tolerance.
- * To determine the structural basis of Pf4 assembly and compartment formation.
- * To explore the role of biophysical occlusion in bacterial survival.
Main Methods:
- * Biochemical reconstitution of phage-mediated protection.
- * Electron cryomicroscopy for atomic structure determination of Pf4.
- * Optical microscopy and electron cryotomography for studying Pf4 assembly and droplet formation.
- * Cellular imaging to observe compartment formation around bacteria.
Main Results:
- * Atomic structures of Pf4 with and without its DNA genome were resolved.
- * Pf4 assembles into liquid crystalline droplets, forming phase-separated occlusive compartments around bacteria.
- * These compartments significantly increase bacterial survival, even with inanimate rod-shaped mimics.
- * Shape and size complementarity are crucial for encapsulation efficiency.
Conclusions:
- * Phage liquid crystalline droplets create protective compartments, conferring antibiotic tolerance to *P. aeruginosa*.
- * Biophysical occlusion by filamentous molecules like Pf4 is a general bacterial survival strategy.
- * This mechanism is relevant to other Gram-negative pathogens harboring similar prophages.
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