Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Equilibrium Conditions for a Particle01:23

Equilibrium Conditions for a Particle

2.1K
When an object is in equilibrium, it is either at rest or moving with a constant velocity. There are two types of equilibrium: static and dynamic. Static equilibrium occurs when an object is at rest, while dynamic equilibrium occurs when an object is moving with a constant velocity. In both cases, there must be a balance of forces acting on the object.
To understand the concept of equilibrium, let us first consider the forces acting on an object. When different forces act on an object, they can...
2.1K
Hybridization of Atomic Orbitals II03:35

Hybridization of Atomic Orbitals II

47.1K
sp3d and sp3d 2 Hybridization
47.1K
Hybridization of Atomic Orbitals I03:24

Hybridization of Atomic Orbitals I

64.6K
The mathematical expression known as the wave function, ψ, contains information about each orbital and the wavelike properties of electrons in an isolated atom. When atoms are bound together in a molecule, the wave functions combine to produce new mathematical descriptions that have different shapes. This process of combining the wave functions for atomic orbitals is called hybridization and is mathematically accomplished by the linear combination of atomic orbitals. The new orbitals that...
64.6K
The Quantum-Mechanical Model of an Atom02:45

The Quantum-Mechanical Model of an Atom

56.2K
Shortly after de Broglie published his ideas that the electron in a hydrogen atom could be better thought of as being a circular standing wave instead of a particle moving in quantized circular orbits, Erwin Schrödinger extended de Broglie’s work by deriving what is now known as the Schrödinger equation. When Schrödinger applied his equation to hydrogen-like atoms, he was able to reproduce Bohr’s expression for the energy and, thus, the Rydberg formula governing hydrogen spectra.
56.2K
Valence Bond Theory and Hybridized Orbitals02:38

Valence Bond Theory and Hybridized Orbitals

27.0K
According to valence bond theory, a covalent bond results when: (1) an orbital on one atom overlaps an orbital on a second atom, and (2) the single electrons in each orbital combine to form an electron pair. The strength of a covalent bond depends on the extent of overlap of the orbitals involved. Maximum overlap is possible when the orbitals overlap on a direct line between the two nuclei.
A σ bond (single bond in a Lewis structure) is a covalent bond in which the electron density is...
27.0K
Maxwell-Boltzmann Distribution: Problem Solving01:20

Maxwell-Boltzmann Distribution: Problem Solving

2.8K
Individual molecules in a gas move in random directions, but a gas containing numerous molecules has a predictable distribution of molecular speeds, which is known as the Maxwell-Boltzmann distribution, f(v).
This distribution function f(v) is defined by saying that the expected number N (v1,v2) of particles with speeds between v1 and v2 is given by
2.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

DFT and Mass Spectrometry Study of (-)ESI-Induced Fragmentation of the Highly Toxic Rodenticide Tetramethylenedisulfotetramine.

ACS omega·2026
Same author

Charged Defects in UO<sub>2</sub> Bulk and Surface: A First-Principles Study.

ACS applied materials & interfaces·2026
Same author

Phosphorylation-Dependent Charge Transport in Biomolecular Junctions of Major Histocompatibility Complex Phosphopeptides.

The journal of physical chemistry. B·2026
Same author

Isolation of an Americium Complex Containing a Radical Ligand.

Journal of the American Chemical Society·2026
Same author

Augmenting Large Language Models for Automated Discovery of F-Element Extractants.

Journal of the American Chemical Society·2026
Same author

Probing <i>f</i>-Block Covalency at the Limits of Hard-Metal/Soft-Ligand Interactions through Chalcogenoether Complexes.

Journal of the American Chemical Society·2025

Related Experiment Video

Updated: Dec 28, 2025

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.6K

Development of Density Functional Tight-Binding Parameters Using Relative Energy Fitting and Particle Swarm

Néstor F Aguirre1, Amanda Morgenstern1, M J Cawkwell1

  • 1Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States.

Journal of Chemical Theory and Computation
|February 21, 2020
PubMed
Summary

We developed a new method to optimize parameters for Density Functional Tight-Binding (DFTB) calculations of organic molecules. This approach improves accuracy for structures and properties by incorporating isomer energies, outperforming previous methods.

More Related Videos

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

769
Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

13.2K

Related Experiment Videos

Last Updated: Dec 28, 2025

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.6K
Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
05:57

Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function

Published on: April 26, 2024

769
Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

13.2K

Area of Science:

  • Computational Chemistry
  • Materials Science

Background:

  • Density Functional Tight-Binding (DFTB) is a computationally efficient method for electronic structure calculations.
  • Accurate parameterization is crucial for DFTB's reliability in predicting molecular properties.
  • Existing DFTB parameterization methods may not fully capture the nuances of organic molecule behavior.

Purpose of the Study:

  • To develop and validate an optimized parameterization strategy for DFTB applied to organic molecules (H, C, N, O).
  • To enhance the accuracy of DFTB in predicting molecular structures and properties, including binding energies, atomic forces, and relative isomer energies.
  • To create a more chemistry-driven DFTB parameterization through advanced objective functions.

Main Methods:

  • Utilized Particle Swarm Optimization (PSO) to find optimal DFTB parameters.
  • Developed an objective function incorporating binding energies, atomic forces (Ballester similarity index), and relative isomer energies (Levenshtein distance-induced similarity).
  • Created comprehensive training and testing datasets covering relevant chemical functional groups.

Main Results:

  • The new DFTB parameterization demonstrates improved accuracy compared to previous methods.
  • Excellent agreement was observed between DFTB results and high-level Density Functional Theory (DFT) data from QM-9 and ANI-1 datasets.
  • The optimized parameters accurately predict molecular structures and properties for organic molecules.

Conclusions:

  • The proposed strategy offers a robust and accurate method for DFTB parameterization of organic molecules.
  • This enhanced DFTB parameterization significantly improves the prediction of molecular structures and properties.
  • The approach is validated against large DFT datasets, showing broad applicability and high fidelity.