Related Experiment Video
Updated: Dec 28, 2025

Thermochemical Studies of NiII and ZnII Ternary Complexes Using Ion Mobility-Mass Spectrometry
Published on: June 8, 2022
Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry
Denis Morsa1, Emeline Hanozin1, Gauthier Eppe1
1Mass Spectrometry Laboratory, MolSys Research Unit, University of Liège, Liège 4000, Belgium.
Trapped ion mobility spectrometry (TIMS) causes significant internal heating in ions, leading to fragmentation. This study quantifies this heating effect, revealing vibrational effective temperatures around 510 K during TIMS analysis.
Area of Science:
- Analytical Chemistry
- Physical Chemistry
- Biophysical Chemistry
Background:
- Ion mobility spectrometry (IMS) is a powerful technique for analyzing biomolecules.
- High electric fields in modern IMS can induce ion activation, leading to structural changes or fragmentation.
- Understanding ion internal energy is crucial for accurate conformational analysis.
Purpose of the Study:
- To quantitatively assess the internal heating of ions during trapped ion mobility spectrometry (TIMS).
- To determine the vibrational effective temperature (Teff,vib) experienced by ions in TIMS.
- To evaluate the impact of ion heating on the structural integrity and conformational analysis of biomolecules.
Main Methods:
- Utilized benzylpyridinium "thermometer" ions to monitor fragmentation yields.
- Measured fragmentation rate constants during TIMS accumulation and analysis steps.
- Translated fragmentation data into vibrational effective temperatures (Teff,vib).
- Analyzed conformational changes in cytochrome c and lysozyme under varying TIMS conditions.
Main Results:
- Significant ion fragmentation was observed upstream and within the TIMS tunnel.
- Vibrational effective temperatures (Teff,vib) were determined to be approximately 510 K.
- Compact native folds of proteins like cytochrome c and lysozyme can be preserved.
- Collision cross section distributions are sensitive to transmission voltages and analysis timescales.
Conclusions:
- TIMS instruments can impart significant internal energy to ions, causing fragmentation.
- The measured temperatures suggest potential limitations for analyzing fragile ions or subtle conformational differences.
- Careful optimization of TIMS parameters is necessary to preserve native protein structures and obtain reliable conformational data.
- These findings are relevant for native mass spectrometry and exploring molecular conformational landscapes.
Related Concept Videos
Phase Transitions: Melting and Freezing
Atomic Spectroscopy: Effects of Temperature
At thermal equilibrium, the relative populations of excited and ground state atoms can be estimated using the Maxwell–Boltzmann distribution. For example, an increase in temperature...
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR
Electrospray Ionization (ESI) Mass Spectrometry
ESI utilizes electrical energy to transfer ions from the liquid phase of the sample into the...
Mass Analyzers: Common Types

