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Updated: Dec 27, 2025

A Novel Saturation Mutagenesis Approach: Single Step Characterization of Regulatory Protein Binding Sites in RNA Using Phosphorothioates
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Modified Aminoglycosides Bind Nucleic Acids in High-Molecular-Weight Complexes.

Lanqing Ying1, Hongkun Zhu1, Marina Y Fosso2

  • 1Department of Microbiology and Center for RNA Biology, The Ohio State University, Columbus, OH 43210-1292, USA.

Antibiotics (Basel, Switzerland)
|February 27, 2020
PubMed
Summary

Modified aminoglycoside antibiotics, like tobramycin, unexpectedly inhibit reverse transcription. These compounds bind strongly to nucleic acids, forming complexes that could be used for nucleic acid delivery or surface localization.

Keywords:
DNARNAkanamycinreverse transcriptasetobramycin

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Area of Science:

  • Medicinal Chemistry
  • Molecular Biology
  • Biochemistry

Background:

  • Aminoglycosides are antibiotics targeting bacterial ribosomes.
  • Research involved studying 6"-substituted tobramycin variants.

Purpose of the Study:

  • To investigate the effects of novel aminoglycoside derivatives.
  • To explore their potential as inhibitors of reverse transcription.
  • To understand their interaction with nucleic acids.

Main Methods:

  • Synthesis and testing of C12 and C14 linear alkyl substituted tobramycin variants.
  • In vitro inhibition assays for reverse transcription.
  • Nucleic acid binding affinity studies (DNA and RNA, single/double-stranded).

Main Results:

  • Compounds with C12 or C14 linear alkyl substituents potently inhibit reverse transcription in vitro.
  • These derivatives exhibit high-affinity binding to both DNA and RNA.
  • Stable, high-molecular-weight complexes form between the compounds and nucleic acids.
  • Amphiphilic nature suggests micelle/vesicle formation with bound nucleic acids.

Conclusions:

  • The studied aminoglycoside derivatives are potent inhibitors of reverse transcription.
  • They interact with nucleic acids, forming stable complexes.
  • Potential applications include nucleic acid surface localization and cellular/organelle delivery systems.