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Updated: Dec 27, 2025

In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
ATR-Mediated FANCI Phosphorylation Regulates Both Ubiquitination and Deubiquitination of FANCD2
Winnie Tan1,2, Sylvie van Twest1, Vincent J Murphy1
1Genome Stability Unit, St Vincent's Institute of Medical Research, Fitzroy, VIC, Australia.
Abstract:
DNA interstrand crosslinks (ICLs) are a physical barrier to replication and therefore toxic to cell viability. An important mechanism for the removal of ICLs is the Fanconi Anemia DNA repair pathway, which is initiated by mono-ubiquitination of FANCD2 and its partner protein FANCI. Here, we show that maintenance of FANCD2 and FANCI proteins in a monoubiquitinated form is regulated by the ATR-kinase. Using recombinant proteins in biochemical reconstitution experiments we show that ATR directly phosphorylates FANCI on serine 556, 559, and 565 to stabilize its association with DNA and FANCD2. This increased association with DNA stimulates the conjugation of ubiquitin to both FANCI and FANCD2, but also inhibits ubiquitin deconjugation. Using phosphomimetic and phosphodead mutants of FANCI we show that S559 and S565 are particularly important for protecting the complex from the activity of the deubiquitinating enzyme USP1:UAF1. Our results reveal a major mechanism by which ATR kinase maintains the activation of the FA pathway, by promoting the accumulation of FANCD2 in the ubiquitinated form active in DNA repair.
Insights
ATR kinase stabilizes the Fanconi Anemia (FA) DNA repair pathway by phosphorylating FANCI, promoting FANCD2 ubiquitination and preventing its removal. This ensures efficient DNA interstrand crosslink repair for cell viability.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- DNA interstrand crosslinks (ICLs) pose a significant threat to DNA replication and cell survival.
- The Fanconi Anemia (FA) pathway is crucial for repairing ICLs, initiated by FANCD2/FANCI ubiquitination.
Purpose of the Study:
- To elucidate the regulatory mechanism of FANCD2/FANCI monoubiquitination by the ATR-kinase in the FA pathway.
- To investigate how ATR-kinase activity influences the stability and function of the FANCD2/FANCI complex during DNA repair.
Main Methods:
- Biochemical reconstitution experiments using recombinant proteins.
- Site-directed mutagenesis to create phosphomimetic and phosphodead FANCI mutants.
- Analysis of protein-DNA association, ubiquitination, and deubiquitination.
Main Results:
- ATR-kinase directly phosphorylates FANCI at serine residues S556, S559, and S565.
- Phosphorylation stabilizes the FANCI-DNA and FANCI-FANCD2 interactions, enhancing ubiquitination and inhibiting deubiquitination.
- FANCI residues S559 and S565 are critical for protecting the complex from USP1:UAF1 deubiquitinase activity.
Conclusions:
- ATR-kinase plays a key role in maintaining FA pathway activation by promoting FANCD2 ubiquitination.
- ATR-mediated phosphorylation of FANCI is essential for stabilizing the active, ubiquitinated form of FANCD2 for DNA repair.
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