Related Experiment Video
Updated: Aug 12, 2026

Conjunctival Commensal Isolation and Identification in Mice
Published on: May 1, 2021
Local oral and nasal microbiome diversity in age-related macular degeneration
Jacob Rullo1, Parsa Mehraban Far2, Matthew Quinn2
1Queen's University, Kingston Health Sciences Center, Department of Ophthalmology, 166 Brock Street, Kingston, Ontario, K7L 5G2, Canada. jrullo@qmed.ca.
Abstract:
Age-related macular degeneration (AMD) is a chronic degenerative disease of the retina. Recent reports have highlighted the potential role of mucosal surface microbes in the pathogenesis of AMD. In this case-control study, the composition of the nasal and oral microbiota in newly diagnosed neovascular age-related macular degeneration cases (6 male, 7 female) was compared to controls without retinal diseases (2 male, 3 female). PCR amplification of 16S rRNA genes was performed with universal primers amplifying the V4 variable region (515F-806R). Distinct microbial community characterization was achieved using Principal Coordinates Analysis (PCoA) of the Bray-Curtis index with comparative analysis between cases and controls performed within QIIME 2. Sequencing of all cases and controls revealed clear separation with strong beta diversity between oral and nasal microbial communities (p < 0.001). Microbial composition differed between cases and controls in both oral and nasal samples. The top three oral microbes identified as different compared to controls included Burkholderiales (7.41 log2fold change, p = 3.29E-05), Actinomyceataceae (6.22 log2fold change, p = 3.73E-06) and Gemella (5.28 log2fold change, p = 0.0002). The top three nasal microbes identified as different compared to controls included Rothia (13.6 log2fold change, p = 3.63E-18), Actinobacteria (10.29 log2fold change, p = 9.81E-10) and Propionibacteriales (8.73 log2fold change, p = 6.74E-09). These relative shifts in communities of bacteria detected in newly diagnosed neovascular AMD patients may suggest additional mechanistic links in disease pathogenesis.
Insights
Microbial differences in the nose and mouth were observed in patients with newly diagnosed neovascular age-related macular degeneration (AMD). These shifts in oral and nasal microbiota may suggest new links to AMD pathogenesis.
Area of Science:
- Ophthalmology
- Microbiology
- Genetics
Background:
- Age-related macular degeneration (AMD) is a leading cause of vision loss.
- Emerging research suggests a connection between mucosal microbes and AMD development.
- Understanding the oral and nasal microbiota's role in AMD is crucial for novel therapeutic strategies.
Purpose of the Study:
- To compare the nasal and oral microbiota composition in patients with newly diagnosed neovascular AMD and healthy controls.
- To identify specific microbial differences associated with neovascular AMD.
- To explore potential mechanistic links between microbiota shifts and AMD pathogenesis.
Main Methods:
- A case-control study involving patients with newly diagnosed neovascular AMD and disease-free controls.
- 16S rRNA gene sequencing targeting the V4 variable region (515F-806R) for microbial community analysis.
- Principal Coordinates Analysis (PCoA) of Bray-Curtis index and comparative analysis using QIIME 2 for distinct microbial characterization.
Main Results:
- Significant beta diversity was observed between oral and nasal microbial communities (p < 0.001).
- Distinct microbial compositions were found in both oral and nasal samples between AMD cases and controls.
- Key oral microbes differing in AMD cases included Burkholderiales, Actinomyceataceae, and Gemella. Significant nasal microbes included Rothia, Actinobacteria, and Propionibacteriales.
Conclusions:
- Relative shifts in oral and nasal bacterial communities are associated with newly diagnosed neovascular AMD.
- These microbial alterations may indicate novel mechanistic pathways contributing to AMD pathogenesis.
- Further research into the gut-retina axis and mucosal immunity in AMD is warranted.
More Related Videos
Related Concept Videos
Development of Human Microbiota
The Skin Microbiota
Microbiome of the Eye
The Oral Microbiota

