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Microbial metaproteome data from decayed beech dead wood.

Lydia Kipping1, Nicholas Holzscheck1, Florian Maurer2

  • 1Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research GmbH - UFZ, Permoserstraße 15, 04318, Leipzig, Germany.

Data in Brief
|March 4, 2020
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Summary
This summary is machine-generated.

Microbial communities drive deadwood decomposition through biological respiration and fragmentation. Metaproteomics revealed the protein profiles of fungi and bacteria involved in beech wood decay.

Keywords:
Dead wood decayFungal-bacterial communityMetaproteomicsProtein extraction

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Area of Science:

  • Ecology
  • Microbiology
  • Biochemistry

Background:

  • Wood decomposition is a critical ecological process in terrestrial ecosystems.
  • This process involves biological respiration, leaching, and fragmentation, primarily driven by microbial activity.
  • Understanding the microbial communities involved in deadwood decay is essential for ecological studies.

Purpose of the Study:

  • To gain deeper insights into microbial communities responsible for deadwood decay.
  • To characterize the protein complement of microbiota within a beech wood log using metaproteomics.
  • To analyze the proteome profile of beech deadwood and its associated fungal-bacterial community.

Main Methods:

  • Utilized metaproteomics to study microbial communities in deadwood.
  • Applied various extraction methods to the beech wood sample.
  • Characterized the protein complement of the environmental microbiota.

Main Results:

  • Provided the proteome profile of beech dead wood.
  • Identified the fungal and bacterial communities present in the decaying wood.
  • Detailed the protein expression of microorganisms involved in wood decomposition.

Conclusions:

  • Metaproteomics is a valuable tool for characterizing microbial communities in environmental samples like deadwood.
  • The study provides a detailed proteomic dataset of beech deadwood decay.
  • This data contributes to understanding the ecological role of microbial consortia in decomposition processes.