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Vitamin D receptor exhibits different pharmacodynamic features in tumoral and normal microenvironments: A molecular
Sergio R Ribone1, Maria J Ferronato2, Cristian Vitale3
1Unidad de Investigación y Desarrollo en Tecnología Farmacéutica (UNITEFA), CONICET and Departamento de Ciencias Farmacéuticas, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba. X5000HUA, Córdoba, Argentina.
Abstract:
The vitamin D receptor (VDR) constitutes a promising therapeutic target for the treatment of cancer. Unfortunately, its natural agonist calcitriol does not have clinical utility due to its potential to induce hypercalcemic effects at the concentrations required to display antitumoral activity. For this reason, the search for new calcitriol analogues with adequate therapeutic profiles has been actively pursued by the scientific community. We have previously reported the obtaining and the biological activity evaluation of new calcitriol analogues by modification of its sidechain, which exhibited relevant antiproliferative and selectivity profiles against tumoral and normal cells. In this work we conducted molecular modeling studies (i.e. molecular docking, molecular dynamics, constant pH molecular dynamics (CpHMD) and free energy of binding analysis) to elucidate at an atomistic level the molecular basis related to the potential of the new calcitriol analogues to achieve selectivity between tumoral and normal cells. Two histidine residues (His305 and His397) were found to exhibit a particular tautomeric configuration that produces the observed bioactivity. Also, different acid-based properties were observed for His305 and His307 with His305 showing an increased acidity (pKa 5.2) compared to His397 (pKa 6.8) and to the typical histidine residue. This behavior favored the pharmacodynamic interaction of the calcitriol analogues exhibiting selectivity for tumoral cells when VDR was modeled at the more acidic tumoral environment (pH ≅ 6) compared to the case when VDR was modeled at pH 7.4 (normal cell environment). On the other hand, non-selective compounds, including calcitriol, exhibited a similar interaction pattern with VDR when the receptor was modeled at both pH conditions. The results presented constitute the first evidence on the properties of the VDR receptor in different physicochemical environments and thus represent a significant contribution to the in silico screening and design of new calcitriol analogues.
Insights
New vitamin D receptor (VDR) agonists show promise for cancer treatment by selectively targeting tumor cells. Molecular modeling revealed specific histidine residue properties in VDR that enable this selectivity, paving the way for improved cancer therapies.
Area of Science:
- Computational chemistry and structural biology
- Molecular pharmacology and drug discovery
Background:
- The vitamin D receptor (VDR) is a therapeutic target for cancer treatment.
- The VDR agonist calcitriol has limited clinical use due to hypercalcemic side effects.
- Novel calcitriol analogues with improved therapeutic profiles are under development.
Purpose of the Study:
- To elucidate the atomistic basis of selectivity for novel calcitriol analogues against tumor cells.
- To understand the role of VDR's physicochemical environment in analogue selectivity.
Main Methods:
- Molecular modeling techniques including molecular docking, molecular dynamics, and constant pH molecular dynamics (CpHMD).
- Free energy of binding analysis.
- Investigation of VDR behavior in simulated tumoral (pH 6) and normal (pH 7.4) cellular environments.
Main Results:
- Specific tautomeric configurations of histidine residues (His305 and His397) were linked to bioactivity.
- His305 exhibited increased acidity (pKa 5.2) compared to His397 (pKa 6.8) and typical histidine.
- Selective calcitriol analogues showed favorable interactions in the acidic tumoral VDR environment, unlike non-selective compounds.
Conclusions:
- The differential acidity of VDR histidine residues contributes to calcitriol analogue selectivity.
- VDR's interaction profile varies significantly between tumoral and normal cellular pH environments.
- These findings provide a foundation for in silico screening and design of novel VDR-targeting cancer drugs.
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