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How polypharmacologic is each chemogenomics library?

Eric Ni1,2,3, Eehjoe Kwon1, Lauren M Young2

  • 1NYU Langone Health, Department of Biochemistry & Molecular Pharmacology, New York, NY 10016, USA.

Future Drug Discovery
|March 10, 2020
PubMed
Summary
This summary is machine-generated.

Chemogenomics libraries aid drug discovery by helping identify small molecule targets. A new polypharmacology index reveals which libraries are most target-specific for effective use in phenotypic screens.

Keywords:
chemogenomicspolypharmacologytarget deconvolution

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Area of Science:

  • Medicinal Chemistry
  • Pharmacology
  • Drug Discovery

Background:

  • High-throughput phenotypic screens are crucial for identifying potential drug candidates.
  • A major challenge in phenotypic screening is determining the specific molecular target of a hit compound.
  • Chemogenomics libraries are increasingly used to address the target deconvolution problem.

Purpose of the Study:

  • To evaluate the target-specificity of various chemogenomics screening libraries.
  • To introduce a quantitative 'polypharmacology index' for assessing library utility.
  • To identify the most suitable libraries for target deconvolution in phenotypic screens.

Main Methods:

  • Compiled known target information for all compounds within selected chemogenomics libraries.
  • Modeled the distribution of compound targets using a Boltzmann distribution histogram.
  • Derived a linearized slope from the Boltzmann fit to represent the polypharmacology index.

Main Results:

  • The polypharmacology index effectively quantified the target-specificity of different libraries.
  • Distinct differences in target-specificity were observed among the screened libraries.
  • One library was identified as significantly more target-specific than others.

Conclusions:

  • The polypharmacology index provides a valuable metric for assessing chemogenomics libraries.
  • The most target-specific library identified is likely superior for target deconvolution.
  • This work aids in selecting optimal libraries for advancing small-molecule drug discovery.