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Published on: April 13, 2022
Structural And Computational Perspectives of Selectively Targeting Mutant Proteins
Mathew A Coban1, Sarah Fraga2, Thomas R Caulfield1
1Department of Cancer Biology, Mayo Clinic, Jacksonville, FL, 32224, United States.
Abstract:
Diseases are often caused by mutant proteins. Many drugs have limited effectiveness and/or toxic side effects because of a failure to selectively target the disease-causing mutant variant, rather than the functional wild type protein. Otherwise, the drugs may even target different proteins with similar structural features. Designing drugs that successfully target mutant proteins selectively represents a major challenge. Decades of cancer research have led to an abundance of potential therapeutic targets, often touted to be "master regulators". For many of these proteins, there are no FDA-approved drugs available; for others, off-target effects result in dose-limiting toxicity. Cancer-related proteins are an excellent medium to carry the story of mutant-specific targeting, as the disease is both initiated and sustained by mutant proteins; furthermore, current chemotherapies generally fail at adequate selective distinction. This review discusses some of the challenges associated with selective targeting from a structural biology perspective, as well as some of the developments in algorithm approach and computational workflow that can be applied to address those issues. One of the most widely researched proteins in cancer biology is p53, a tumor suppressor. Here, p53 is discussed as a specific example of a challenging target, with contemporary drugs and methodologies used as examples of burgeoning successes. The oncogene KRAS, which has been described as "undruggable", is another extensively investigated protein in cancer biology. This review also examines KRAS to exemplify progress made towards selective targeting of diseasecausing mutant proteins. Finally, possible future directions relevant to the topic are discussed.
Insights
Developing drugs that selectively target mutant proteins is crucial for effective disease treatment. This review explores structural biology challenges and computational advances for mutant-specific drug design, using p53 and KRAS as examples.
Area of Science:
- Biochemistry
- Structural Biology
- Computational Drug Discovery
Background:
- Mutant proteins drive many diseases, but current drugs often lack selectivity, targeting wild-type proteins or causing off-target toxicities.
- Cancer therapies frequently struggle to distinguish between functional and disease-causing protein variants, limiting efficacy and increasing side effects.
- Selective targeting of mutant proteins is a significant challenge in drug development, particularly for complex diseases like cancer.
Purpose of the Study:
- To review the challenges in selectively targeting mutant proteins from a structural biology viewpoint.
- To discuss algorithmic and computational approaches for addressing these targeting challenges.
- To highlight progress and future directions in mutant-specific drug design using cancer-related proteins as examples.
Main Methods:
- Analysis of structural biology challenges in mutant protein targeting.
- Review of computational workflows and algorithmic approaches for selective drug design.
- Case studies of p53 and KRAS proteins to illustrate successful mutant-specific targeting strategies.
Main Results:
- Structural biology provides insights into the difficulties of achieving mutant protein selectivity.
- Advances in computational methods and algorithms are enabling more precise drug design.
- Progress has been made in developing targeted therapies for previously undruggable targets like KRAS and challenging targets like p53.
Conclusions:
- Selective mutant protein targeting is essential for improving drug efficacy and reducing toxicity.
- Computational approaches and structural biology are key to overcoming challenges in designing targeted therapies.
- Continued research into proteins like p53 and KRAS promises new avenues for precision medicine.
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