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Updated: Dec 26, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Gut microbiome variation is associated to Multiple Sclerosis phenotypic subtypes.
Tatjana Reynders1,2,3, Lindsay Devolder3,4,5, Mireia Valles-Colomer4,5
1Department of Neurology, Universitair Ziekenhuis Antwerpen, Edegem, Belgium.
Multiple sclerosis (MS) gut microbiota varies by disease subtype and treatment. Lower microbial richness and altered enterotypes are linked to specific MS forms, suggesting microbiome biomarkers for disease activity.
Area of Science:
- Neuroimmunology
- Microbiome Research
- Gastroenterology
Background:
- Multiple sclerosis (MS) is a complex central nervous system inflammatory disease.
- Gut microbiota alterations are observed in MS patients, but findings are inconsistent.
- Understanding these variations is crucial for identifying disease biomarkers.
Purpose of the Study:
- To investigate gut microbiota diversity, enterotypes, and specific taxa in MS patients compared to healthy controls (HC).
- To analyze variations within MS subgroups based on phenotype, disease course, and treatment.
- To explore the relationship between microbial composition and clinical symptoms/disease severity.
Main Methods:
- 16S rRNA gene amplicon sequencing of stool samples from 98 MS patients and 120 HC.
- Analysis of alpha and beta diversity, enterotype profiling, and relative abundance of microbial taxa.
- Controlled for potential confounders and stratified MS subgroups by clinical characteristics.
Main Results:
- Microbial richness was lower in interferon-treated and untreated relapsing-remitting MS during relapse compared to benign and primary progressive MS.
- Enterotypes, specifically Bacteroides 2, were more prevalent in interferon-treated relapsing-remitting MS.
- Lower abundance of Butyricicoccus was observed in primary progressive MS and interferon-treated relapsing-remitting MS, correlating inversely with symptoms and disease severity.
Conclusions:
- Phenotypic subcategorization is essential for consistent MS-microbiome research.
- Gut microbiota composition differs significantly across MS subtypes.
- Microbiome-based biomarkers show potential for assessing MS disease activity and severity.
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