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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
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Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
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Related Experiment Video

Updated: Dec 26, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
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Protease-Catalyzed l-Aspartate Oligomerization: Substrate Selectivity and Computational Modeling.

Fan Yang1, Filbert Totsingan1, Elliott Dolan2

  • 1Center for Biotechnology and Interdisciplinary Studies (CBIS), Rensselaer Polytechnic Institute, 1623 15th Street, Troy, New York 12180, United States.

ACS Omega
|March 17, 2020
PubMed
Summary

Researchers developed a sustainable method using protease catalysis to create oligo(β-ethyl-α-aspartate) from l-aspartate diethyl ester. Alpha-chymotrypsin proved most effective, yielding 60% with a degree of polymerization of 12 in 5 minutes.

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Area of Science:

  • Biocatalysis and Polymer Chemistry
  • Sustainable synthesis of biodegradable polymers

Background:

  • Poly(aspartic acid) (PAA) is a biodegradable, water-soluble anionic polymer with potential industrial applications and promise in regenerative medicine and drug delivery.
  • Existing methods for PAA synthesis may not be efficient or sustainable.
  • Protease enzymes offer a green chemistry approach for peptide and polymer synthesis.

Purpose of the Study:

  • To develop an efficient and sustainable protease-catalyzed method for synthesizing oligo(β-ethyl-α-aspartate) (oligo(β-Et-α-Asp)).
  • To identify the optimal protease and reaction conditions for this synthesis.
  • To characterize the resulting oligomers and understand the enzymatic mechanism.

Main Methods:

  • Enzymatic oligomerization of l-aspartate diethyl ester (Et2-Asp) using various proteases.
  • Comparative analysis of protease activity (α-chymotrypsin vs. papain).
  • Optimization of reaction parameters (pH, temperature, time, concentrations).
  • Structural characterization using NMR, circular dichroism, and computational modeling (Rosetta).

Main Results:

  • Alpha-chymotrypsin was identified as the most efficient protease for Et2-Asp oligomerization, unlike papain.
  • Optimal conditions (pH 8.5, 40 °C, 0.5 M Et2-Asp, 3 mg/mL α-chymotrypsin) yielded ~60% oligo(β-Et-α-Asp) with a DPavg of ~12 in 5 minutes.
  • NMR and CD analyses confirmed α-linkages, and Rosetta modeling supported enzyme substrate specificity.

Conclusions:

  • Protease-catalyzed synthesis using α-chymotrypsin provides an efficient and sustainable route to oligo(β-Et-α-Asp).
  • The method offers high yields and controlled polymerization under mild conditions.
  • This approach advances the development of biodegradable polymers for various applications.