Related Experiment Video
Updated: Dec 26, 2025

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
Longitudinal characterization of bifidobacterial abundance and diversity profile developed in Thai healthy infants
Khanitta Kongnum1, Siriporn Taweerodjanakarn1, Tipparat Hongpattarakere2
1Department of Industrial Biotechnology, Faculty of Agro-Industry, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand.
Insights
Early infant gut microbiota development is crucial for health. Breastfeeding promotes bifidobacteria colonization, essential for infant gut health, with strains potentially originating from maternal milk.
Area of Science:
- Microbiology
- Infant Gut Microbiome
- Human Health
Background:
- Early life microbial colonization is vital for infant health.
- Bifidobacteria play a critical role in establishing a healthy infant gut microbiome.
- Understanding the influence of feeding regimens on infant gut microbiota is essential.
Purpose of the Study:
- To longitudinally analyze and characterize fecal bifidobacterial profiles in infants.
- To investigate the association between feeding regimens (breastfeeding vs. formula feeding) and bifidobacterial colonization.
- To determine the origin of persisting bifidobacterial strains in the infant gut.
Main Methods:
- Enumeration of dominant fecal microbiota using fluorescent in situ hybridization (FISH).
- Analysis of bifidobacterial diversity and strain variants using nested PCR-DGGE.
- Comparison of fecal microbiota profiles with human milk microbiota from mother-infant pairs.
Main Results:
- Exclusive breastfeeding was strongly associated with the predominance of bifidobacteria (32-70% relative abundance).
- Multiple bifidobacterial species and strain variants were continuously detected in exclusively breast-fed and combination-fed infants.
- Exclusively formula-fed infants showed transient bifidobacterial species, with persisting strains potentially originating from maternal breast milk.
Conclusions:
- Breastfeeding plays a pivotal role in supporting the colonization and succession of bifidobacteria in the infant gut.
- The maternal milk microbiome is a likely source of beneficial bifidobacteria for infants.
- Early gut microbiome composition influenced by feeding practices has long-term health implications.
Abstract:
The early bifidobacterial colonization and development of infant gut is considered crucial for the immediate and lifelong health of human host. This study longitudinally analyzed and characterized fecal bifidobacterial profiles in association with feeding regimens observed in six infants during 5 months after birth. The dominant fecal microbiota of bifidobacteria, lactobacilli/enterococci, clostridia, bacteroides and eubacteria were specifically enumerated using fluorescent in situ hybridization (FISH) technique. Breastfeeding exhibited close association with the predomination of bifidobacteria with the highest relative abundance of 32-70% detected in both infants with exclusive breastfeeding. The nested PCR-DGGE technique revealed high diversity existing within a bifidobacterial species with multiple strain variants of B. bifidum, B. longum, B. breve and B. dentium continuously detected in feces of exclusively breast- and combination-fed infants over the period of 5 months. Contrarily, B. breve, B. adolescentis, B. dentium, B. bifidum, B. faecale, B. kashiwanohense and B. lactis detected in all exclusively formula-fed infants seem to be transient species. The persisting strains seem to derive primarily from maternal breastmilk as demonstrated by PCR-DGGE profiles of human milk and feces from three mother-infant pairs. The results suggested the pivotal role of breastfeeding regimen in supporting colonization and succession of bifidobacteria in infant gut.
Related Concept Videos
Anatomy of the Intestines
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...
Bacterial Phylum Firmicutes
Bacterial Flora of the Large Intestine
The normal gut flora of the colon plays a critical role in generating essential vitamins such as vitamins K, B5, and B7.
Bacterial Phylum Bacteroidota
Bacterial Phylum Actinobacteria
Bacterial Phylum Tenericutes

