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Amino acids03:42

Amino acids

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Amino acids are the monomers that comprise proteins. Each amino acid has the same fundamental structure, which consists of a central carbon atom, or the alpha (α) carbon, bonded to an amino group (NH2), a carboxyl group (COOH), and to a hydrogen atom. Every amino acid also has another atom or group of atoms bonded to the central atom known as the R group. There are 20 common amino acids present in proteins, each with a different R group. Variation in the amino acid sequence is responsible for...
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Polydentate ligands are most widely used in complexometric titrations because they form more stable complexes with the metal ions than mono- or bidentate ligands due to the chelate effect. Examples of polydentate ligands are ethylenediaminetetraacetic acid (EDTA), crown ethers, and cryptands. The most important feature of optimal polydentate ligands is the ability to form 1:1 complexes in a single-step process. Amino carboxylic acid derivatives are frequently used as complexing agents. EDTA is...
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A type of Lewis acid-base chemistry involves the formation of a complex ion (or a coordination complex) comprising a central atom, typically a transition metal cation, surrounded by ions or molecules called ligands. These ligands can be neutral molecules like H2O or NH3, or ions such as CN− or OH−. Often, the ligands act as Lewis bases, donating a pair of electrons to the central atom. These types of Lewis acid-base reactions are examples of a broad subdiscipline called coordination...
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In complexation reactions, metal atoms or cations interact with ligands to form donor-acceptor adducts called metal complexes. Ligands that bind through one donor site are monodentate, ligands with two donor sites are bidentate, and those with more than two donor sites are polydentate ligands. For example, ethylene diamine is a bidentate ligand that binds through two nitrogen donor atoms, forming a five-membered ring. EDTA is a polydentate ligand that binds through four oxygen and two nitrogen...
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The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are...
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Acids are classified by the number of protons per molecule that they can give up in a reaction. Acids such as HCl, HNO3, and HCN that contain one ionizable hydrogen atom in each molecule are called monoprotic acids. Their reactions with water are:
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Anion-Anion Complexes Established between Aspartate Dimers.

Matias O Miranda1,2, Darío J R Duarte1,2, Ibon Alkorta3

  • 1Laboratorio de Estructura Molecular y Propiedades Departamento de Química Facultad de Ciencias Exactas y Naturales y Agrimensura, Universidad Nacional del Nordeste, Avenida Libertad 5460, 3400, Corrientes, Argentina.

Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry
|March 20, 2020
PubMed
Summary
This summary is machine-generated.

Aspartate-aspartate dimers form spontaneously in water but face energy barriers in the gas phase. Hydrogen bonds in water are primarily electrostatic with some covalent character, while H-H interactions are stabilizing and quantum in nature.

Keywords:
QTAIManion-anion interactioncovalence degreedensity functional calculationshydrogen bond

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Area of Science:

  • Computational chemistry
  • Molecular modeling
  • Biophysics

Background:

  • Aspartate-aspartate dimers are relevant in biological systems.
  • Understanding dimer formation requires studying interactions in different phases.
  • Theoretical simulations are crucial for detailed molecular analysis.

Purpose of the Study:

  • To investigate the stability and formation of aspartate-aspartate dimers in aqueous and gas phases.
  • To analyze the nature of hydrogen bonds and interactions within these dimers.
  • To determine the energy barriers for dimer formation in different environments.

Main Methods:

  • Theoretical simulations using the polarizable continuum model (PCM) for hydration effects.
  • Quantum theory of atoms in molecules (QTAIM) and interacting quantum atoms (IQA) for interaction analysis.
  • Calculation of energy barriers for dimer formation.

Main Results:

  • Spontaneous formation of aspartate-aspartate dimers observed in aqueous phase.
  • Significant energy barriers (100.8–263.2 kJ/mol) for dimer formation in the gas phase.
  • Aqueous phase hydrogen bonds (N-H⋅⋅⋅O) are predominantly electrostatic with increasing covalent character.
  • Observed H⋅⋅⋅H interactions are stabilizing and quantum in nature.

Conclusions:

  • Hydration significantly facilitates aspartate-aspartate dimer formation.
  • The nature of hydrogen bonding in aqueous solution is primarily electrostatic.
  • Intermolecular distances and interaction types dictate molecular recognition in dimer formation.