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Updated: Dec 25, 2025

Detection of Targetable Alterations in Non-small Cell Lung Cancer using Next-generation Sequencing
Published on: October 10, 2025
Genomic and pathological heterogeneity in clinically diagnosed small cell lung cancer in never/light smokers
Atsuko Ogino1, Jihyun Choi1, Mika Lin1
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Abstract:
Small-cell lung cancer (SCLC) occurs infrequently in never/former light smokers. We sought to study this rare clinical subset through next-generation sequencing (NGS) and by characterizing a representative patient-derived model. We performed targeted NGS, as well as comprehensive pathological evaluation, in 11 never/former light smokers with clinically diagnosed SCLC. We established a patient-derived model from one such patient (DFCI168) harboring an NRASQ61K mutation and characterized the sensitivity of this model to MEK and TORC1/2 inhibitors. Despite the clinical diagnosis of SCLC, the majority (8/11) of cases were either of nonpulmonary origin or of mixed histology and included atypical carcinoid (n = 1), mixed non-small-cell lung carcinoma and SCLC (n = 4), unspecified poorly differentiated carcinoma (n = 1), or small-cell carcinoma from different origins (n = 2). RB1 and TP53 mutations were found in four and five cases, respectively. Predicted driver mutations were detected in EGFR (n = 2), NRAS (n = 1), KRAS (n = 1), BRCA1 (n = 1), and ATM (n = 1), and one case harbored a TMPRSS2-ERG fusion. DFCI168 (NRASQ61K ) exhibited marked sensitivity to MEK inhibitors in vitro and in vivo. The combination of MEK and mTORC1/2 inhibitors synergized to prevent compensatory mTOR activation, resulting in prolonged growth inhibition in this model and in three other NRAS mutant lung cancer cell lines. SCLC in never/former light smokers is rare and is potentially a distinct disease entity comprised of oncogenic driver mutation-harboring carcinomas morphologically and/or clinically mimicking SCLC. Comprehensive pathologic review integrated with genomic profiling is critical in refining the diagnosis and in identifying potential therapeutic options.
Insights
Small-cell lung cancer in never/former light smokers is rare and often misdiagnosed. Genomic profiling reveals diverse driver mutations, with one model showing promise for MEK and mTORC1/2 inhibitor therapy.
Area of Science:
- Oncology
- Genomics
- Pathology
Background:
- Small-cell lung cancer (SCLC) is uncommon in never/former light smokers.
- This patient group represents a rare clinical subset requiring further investigation.
Purpose of the Study:
- To investigate the molecular and pathological characteristics of SCLC in never/former light smokers.
- To establish and characterize a patient-derived model for therapeutic sensitivity testing.
Main Methods:
- Targeted next-generation sequencing (NGS) and comprehensive pathological evaluation of 11 SCLC cases.
- Establishment and in vitro/in vivo characterization of a patient-derived model (DFCI168).
- Assessment of sensitivity to MEK and mTORC1/2 inhibitors.
Main Results:
- Most cases (8/11) were misclassified SCLC, with nonpulmonary origins or mixed histologies.
- Identified driver mutations including NRASQ61K, RB1, TP53, EGFR, KRAS, BRCA1, ATM, and TMPRSS2-ERG fusion.
- The DFCI168 model (NRASQ61K) showed sensitivity to MEK inhibitors; combination therapy with mTORC1/2 inhibitors demonstrated synergistic effects.
Conclusions:
- SCLC in never/former light smokers is a heterogeneous group of carcinomas that can mimic SCLC.
- Integrated pathological review and genomic profiling are crucial for accurate diagnosis.
- Identifying specific driver mutations can guide targeted therapeutic strategies, including combination therapies.
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