MIRAGE syndrome caused by a novel missense variant (p.Ala1479Ser) in the SAMD9 gene

Shinsuke Onuma1, Tamaki Wada1, Ryosuke Araki2

  • 1Department of Gastroenterology, Nutrition, and Endocrinology, Osaka Women's and Children's Hospital, Osaka, Japan.

Human Genome Variation
|March 21, 2020
PubMed

Insights

MIRAGE syndrome, a rare genetic disorder, is linked to the SAMD9 gene. This study identifies a new de novo variant in a Japanese patient, advancing understanding of genotype-phenotype correlations in MIRAGE syndrome.

Area of Science:

  • Genetics
  • Rare Diseases
  • Molecular Biology

Background:

  • MIRAGE syndrome is a recently identified disorder characterized by myelodysplasia, infection, growth restriction, adrenal hypoplasia, genital phenotypes, and enteropathy.
  • The syndrome results from gain-of-function variants in the SAMD9 gene.
  • Limited information exists on genotype-phenotype correlations in MIRAGE syndrome.

Purpose of the Study:

  • To report a novel de novo SAMD9 gene variant in a Japanese patient with MIRAGE syndrome.
  • To contribute to the understanding of genotype-phenotype correlations in MIRAGE syndrome.

Main Methods:

  • Case report of a Japanese patient with MIRAGE syndrome.
  • Genetic analysis to identify variants in the SAMD9 gene.

Main Results:

  • A novel de novo heterozygous missense variant in the SAMD9 gene (c.4435G>T; p.Ala1479Ser) was identified in the patient.
  • This variant is associated with the clinical presentation of MIRAGE syndrome.

Conclusions:

  • The identification of this novel variant expands the known spectrum of SAMD9 mutations in MIRAGE syndrome.
  • This finding aids in further elucidating the genotype-phenotype correlation for this rare disorder.

Related Concept Videos

The Retinoblastoma Gene01:20

The Retinoblastoma Gene

Tumor suppressor genes are normal genes that can slow down cell division, repair DNA mistakes, or program the cells for apoptosis in case of irreparable damage. Hence, they play an essential role in preventing the proliferation of damaged cells.
The first-ever tumor suppressor gene called Rb was identified in retinoblastoma - a rare eye tumor in children. In inherited forms of the disease, a child inherits one defective copy of the Rb gene, which predisposes them to retinoblastoma. However,...
4.6K
Point and Frameshift Mutations01:30

Point and Frameshift Mutations

Point mutations are genetic alterations involving the change of a single nucleotide base pair in DNA. Depending on how the alteration affects protein synthesis, they can lead to various consequences.Point mutations fall into the following types:Silent mutations occur when a nucleotide change does not alter the amino acid sequence due to the redundancy of the genetic code. For instance, changing ACC to ACA still encodes threonine, leaving the protein function unaffected. This occurs because...
706
Mismatch Repair01:20

Mismatch Repair

Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
6.2K
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
24.5K
Pleiotropy01:33

Pleiotropy

Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...
43.0K