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A Review of Candidate Genes and Pathways in Preeclampsia-An Integrated Bioinformatical Analysis
Muhammad Aliff Mohamad1, Nur Fariha Mohd Manzor1, Noor Fadzilah Zulkifli1
1Faculty of Medicine and Health Sciences, Universiti Sains Islam Malaysia, Kuala Lumpur 56100, Selangor, Malaysia.
Insights
This study identified 250 differentially expressed genes in preeclampsia, revealing extracellular matrix organization and immune processes as key pathways. These findings offer potential biomarkers for preeclampsia risk stratification and treatment.
Area of Science:
- Obstetrics and Gynecology
- Genetics
- Bioinformatics
Background:
- Preeclampsia is a major global cause of maternal and fetal mortality, with unclear etiopathologies.
- Gene expression differences are implicated in preeclampsia development.
- Understanding genetic factors is crucial for improving preeclampsia management.
Purpose of the Study:
- To systematically review and analyze human gene expression studies in preeclampsia.
- To identify differentially expressed genes and associated biological pathways in preeclampsia.
- To explore potential genetic biomarkers for preeclampsia risk and treatment.
Main Methods:
- Systematic literature search of PubMed, Scopus, Ovid-Medline, and Gene Expression Omnibus up to 2019.
- Inclusion of original research using high-throughput sequencing of human placental tissues.
- Bioinformatic analysis using DAVID, STRING, and Cytoscape MCODE for gene and pathway identification.
Main Results:
- Analysis of three studies identified 250 differentially expressed genes (p < 0.05).
- Candidate genes including LEP, NRIP1, SASH1, and ZADHHC8P1 were identified.
- Gene Ontology analysis highlighted extracellular matrix organization (upregulated) and immune process (downregulated) as significant pathways.
Conclusions:
- Gene expression studies provide insights into preeclampsia mechanisms.
- Integrated bioinformatics can identify candidate genes and pathways for preeclampsia.
- Identified genes and pathways may serve as potential biomarkers for risk stratification and therapeutic targets.
Abstract:
: Preeclampsia is a pregnancy-specific disorder characterized by the presence of hypertension with the onset of either proteinuria, maternal organ or uteroplacental dysfunction. Preeclampsia is one of the leading causes of maternal and fetal mortality and morbidity worldwide. However, the etiopathologies of preeclampsia are not fully understood. Many studies have indicated that genes are differentially expressed between normal and in the disease state. Hence, this study systematically searched the literature on human gene expression that was differentially expressed in preeclampsia. An electronic search was performed through 2019 through PubMed, Scopus, Ovid-Medline, and Gene Expression Omnibus where the following MeSH (Medical Subject Heading) terms were used and they had been specified as the primary focus of the articles: Gene, placenta, preeclampsia, and pregnancy in the title or abstract. We also found additional MeSH terms through Cochrane Library: Transcript, sequencing, and profiling. From 687 studies retrieved from the search, only original publications that had performed high throughput sequencing of human placental tissues that reported on differentially expressed genes in pregnancies with preeclampsia were included. Two reviewers independently scrutinized the titles and abstracts before examining the eligibility of studies that met the inclusion criteria. For each study, study design, sample size, sampling type, and method for gene analysis and gene were identified. The genes listed were further analyzed with the DAVID, STRING and Cytoscape MCODE. Three original research articles involving preeclampsia comprising the datasets in gene expression were included. By combining three studies together, 250 differentially expressed genes were produced at a significance setting of p < 0.05. We identified candidate genes: LEP, NRIP1, SASH1, and ZADHHC8P1. Through GO analysis, we found extracellular matrix organization as the highly significant enriched ontology in a group of upregulated genes and immune process in downregulated genes. Studies on a genetic level have the potential to provide new insights into the regulation and to widen the basis for identification of changes in the mechanism of preeclampsia. Integrated bioinformatics could identify differentially expressed genes which could be candidate genes and potential pathways in preeclampsia that may improve our understanding of the cause and underlying molecular mechanisms that could be used as potential biomarkers for risk stratification and treatment.
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