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DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
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A rhodamine B-based lysosomal pH probe.

Shi-Li Shen1, Xin-Peng Chen, Xiao-Fan Zhang

  • 1Institute of Organic Chemistry, School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, P. R. China. bxzhao@sdu.edu.cn.

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Summary
This summary is machine-generated.

A new fluorescent probe, RML, effectively detects acidic conditions in lysosomes. This rhodamine B-based probe shows high selectivity and can visualize lysosomal pH changes in living cells.

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Area of Science:

  • Biochemistry
  • Cell Biology
  • Chemical Biology

Background:

  • Lysosomal pH is crucial for cellular processes.
  • Existing probes may lack selectivity or require specific conditions.
  • Rhodamine B dyes offer pH-dependent fluorescence properties.

Purpose of the Study:

  • To develop a novel, selective fluorescent probe for monitoring lysosomal pH.
  • To characterize the probe's response to acidic environments.
  • To validate the probe's utility in live-cell imaging.

Main Methods:

  • Synthesis of a rhodamine B-based probe (RML) with a lysosome-targeting moiety.
  • Evaluation of probe response to pH variations and selectivity against biomolecules.
  • Live-cell imaging experiments in HeLa cells to visualize lysosomes.

Main Results:

  • RML demonstrated rapid response to acidic pH at low concentrations.
  • The probe exhibited excellent membrane permeability and selectivity.
  • An 80-fold fluorescence increase was observed between pH 7.40 and 4.00 (pKa = 5.16).
  • RML successfully stained lysosomes in live HeLa cells and detected induced pH changes.

Conclusions:

  • RML is a valuable tool for studying intracellular acidic organelles, particularly lysosomes.
  • The probe's characteristics make it suitable for real-time monitoring of lysosomal pH dynamics.
  • RML facilitates the investigation of cellular processes affected by lysosomal pH.