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Updated: Dec 24, 2025

Engineering Oncogenic Heterozygous Gain-of-Function Mutations in Human Hematopoietic Stem and Progenitor Cells
Published on: March 10, 2023
Gain-of-Function Genetic Alterations of G9a Drive Oncogenesis
Shinichiro Kato1, Qing Yu Weng1, Megan L Insco2,3,4
1Cutaneous Biology Research Center, Department of Dermatology, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts.
Abstract:
Epigenetic regulators, when genomically altered, may become driver oncogenes that mediate otherwise unexplained pro-oncogenic changes lacking a clear genetic stimulus, such as activation of the WNT/β-catenin pathway in melanoma. This study identifies previously unrecognized recurrent activating mutations in the G9a histone methyltransferase gene, as well as G9a genomic copy gains in approximately 26% of human melanomas, which collectively drive tumor growth and an immunologically sterile microenvironment beyond melanoma. Furthermore, the WNT pathway is identified as a key tumorigenic target of G9a gain-of-function, via suppression of the WNT antagonist DKK1. Importantly, genetic or pharmacologic suppression of mutated or amplified G9a using multiple in vitro and in vivo models demonstrates that G9a is a druggable target for therapeutic intervention in melanoma and other cancers harboring G9a genomic aberrations. SIGNIFICANCE: Oncogenic G9a abnormalities drive tumorigenesis and the "cold" immune microenvironment by activating WNT signaling through DKK1 repression. These results reveal a key druggable mechanism for tumor development and identify strategies to restore "hot" tumor immune microenvironments.This article is highlighted in the In This Issue feature, p. 890.
Insights
Activating mutations and copy gains in the G9a gene drive melanoma growth and immune evasion by activating WNT signaling. Targeting G9a offers a therapeutic strategy for melanoma and other cancers.
Area of Science:
- Oncology
- Epigenetics
- Cancer Genomics
Background:
- Genomic alterations in epigenetic regulators can act as oncogenes, driving cancer progression without clear genetic mutations.
- The WNT/β-catenin pathway is frequently activated in various cancers, including melanoma.
- The role of G9a histone methyltransferase in melanoma tumorigenesis and immune microenvironment modulation remains largely unexplored.
Purpose of the Study:
- To identify genomic alterations in the G9a gene in human melanomas.
- To investigate the functional consequences of G9a alterations on tumor growth and the immune microenvironment.
- To determine if G9a is a druggable target for melanoma therapy.
Main Methods:
- Analysis of G9a gene mutations and copy number variations in melanoma patient samples.
- In vitro and in vivo experimental models to assess the impact of G9a on WNT pathway activation, tumor growth, and immune cell infiltration.
- Pharmacological and genetic inhibition of G9a activity.
Main Results:
- Recurrent activating mutations and copy gains in G9a were identified in approximately 26% of melanomas.
- G9a gain-of-function promotes tumor growth and creates an immunologically "cold" microenvironment.
- G9a activates the WNT pathway by suppressing the expression of the WNT antagonist DKK1.
- Inhibition of G9a demonstrated therapeutic potential in preclinical models.
Conclusions:
- Genomic aberrations in G9a are oncogenic drivers in melanoma, promoting tumor growth and immune suppression.
- G9a-mediated WNT pathway activation through DKK1 repression is a key mechanism of tumorigenesis.
- G9a represents a druggable target for melanoma treatment, with potential to convert "cold" to "hot" tumors.
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