Search research articles

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by

Same author

Primer Design through Submodular Function Estimation.

Bioinformatics (Oxford, England)·2026

Same author

Accelerating String Comparison in RLZ Compressed Sequences via LCE Jumps.

bioRxiv : the preprint server for biology·2026

Same author

Socioeconomic and Clinical Determinants Driving Access to BRCA Genetic Testing in Cancer : A Case-Control Study Using Observational Electronic Health Records Across Multiple Sites.

medRxiv : the preprint server for health sciences·2026

Same author

Consistency in causal reasoning for large language models in scenarios of HIV antiretroviral treatment, drug interactions, and side effects.

NPJ digital medicine·2026

Same author

Integrating Causal Inference and Agent-Based Modelling to Assess the Impact of Clinicians' Guideline Adherence in Older Adults Hospitalized with Pneumonia.

Studies in health technology and informatics·2026

Same author

Building genomic data structures from compressed representations using prefix-free parsing.

Genome research·2026

Same journal

Cross-Domain Transfer Learning from Peptides to Metabolites Using a Multi-Property Fine-Tuned LLM.

Bioinformatics (Oxford, England)·2026

Same journal

Biomedical Concept Recognition with Error-aware Negative-enhanced Ranking Framework.

Bioinformatics (Oxford, England)·2026

Same journal

TEDLH: Domain HMMs for sensitive detection of remote homologues.

Bioinformatics (Oxford, England)·2026

Same journal

PLNFGL: Joint Estimation of Multi-Condition Gene Networks from Single-cell RNA-seq Data.

Bioinformatics (Oxford, England)·2026

Same journal

MCFST: Spatial domain identification method based on multi-view graph convolutional network and graph fusion network.

Bioinformatics (Oxford, England)·2026

Same journal

SpaBiT: Enhancing Spatial Transcriptomics Resolution via Bidirectional Attention Transformers.

Bioinformatics (Oxford, England)·2026

See all related articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Search research articles

Related Experiment Video

Updated: Dec 24, 2025

Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings

Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings

Published on: August 18, 2023

Portable nanopore analytics: are we there yet?

Marco Oliva^1,2, Franco Milicchio¹, Kaden King²

¹Department of Engineering, Roma Tre University, Rome, Italy.

Bioinformatics (Oxford, England)

|April 12, 2020

Summary

This summary is machine-generated.

Porting Oxford Nanopore (ONT) sequencing analysis software to mobile devices is challenging. While some tools were adapted, many failed, indicating limited current portability for mobile bioinformatics.

More Related Videos

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Published on: June 3, 2019

Membrane Transport Processes Analyzed by a Highly Parallel Nanopore Chip System at Single Protein Resolution

Membrane Transport Processes Analyzed by a Highly Parallel Nanopore Chip System at Single Protein Resolution

Published on: August 16, 2016

Related Experiment Videos

Last Updated: Dec 24, 2025

Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings

Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings

Published on: August 18, 2023

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Published on: June 3, 2019

Membrane Transport Processes Analyzed by a Highly Parallel Nanopore Chip System at Single Protein Resolution

Membrane Transport Processes Analyzed by a Highly Parallel Nanopore Chip System at Single Protein Resolution

Published on: August 16, 2016

Area of Science:

Bioinformatics
Genomics
Mobile Computing

Background:

Oxford Nanopore (ONT) sequencing offers real-time, high-throughput data generation.
Current ONT data analysis relies heavily on cloud or personal computer infrastructure.
True portability requires software compatible with mobile devices and limited internet connectivity.

Purpose of the Study:

To assess the portability of existing Oxford Nanopore (ONT) data analysis software to mobile platforms.
To identify challenges and successes in recompiling and running bioinformatics tools on smartphones and tablets.

Main Methods:

Selected bioinformatics tools for ONT data analysis were ported to an Android smartphone.
Software was recompilied and benchmarked for functionality and performance.
Analysis included evaluating recompilation success rates and resource utilization.

Main Results:

Out of 23 programs tested, only 11 were successfully ported and functional.
Common failures included missing standard headers and unsupported instruction sets.
DSK, BCALM2, and Kraken processed large files (up to 16 GB) efficiently, but experienced high CPU temperatures.

Conclusions:

The current portability of ONT analysis software to mobile devices is limited.
Further development is needed, focusing on ARM chipsets and mobile operating systems (Android/iOS).
Mobile-specific libraries and developer attention are crucial for advancing portable bioinformatics.