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Updated: Dec 24, 2025

Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
Published on: July 24, 2018
Plant nutrient-acquisition strategies drive topsoil microbiome structure and function.
Mohammad Bahram1,2, Tarquin Netherway2, Falk Hildebrand3,4
1Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St, 51005, Tartu, Estonia.
Plant nutrient strategies significantly alter soil microbiomes. Arbuscular mycorrhizal (AM) vegetation sites host more AM fungi and bacteria, while ectomycorrhizal (EM) sites show lower diversity, impacting soil functions.
Area of Science:
- Soil ecology
- Microbiology
- Plant science
Background:
- Plant nutrient acquisition strategies influence soil processes and vegetation performance.
- Understanding the soil microbiome's response to vegetation changes is crucial for predicting ecosystem shifts under global change.
Purpose of the Study:
- To investigate the impact of different vegetation types and nutritional traits on topsoil microbiomes.
- To correlate vegetation traits, such as mycorrhizal types, with soil microbial community structure and function.
Main Methods:
- Analysis of topsoil microbiomes across 145 boreal and temperate sites in the Baltic region.
- Characterization of vegetation types, mycorrhizal associations (arbuscular mycorrhizal - AM, ectomycorrhizal - EM), and nitrogen-fixation.
- Assessment of microbial diversity, abundance of specific microbial groups, and enzyme activities.
Main Results:
- AM-dominated sites showed higher abundance of AM fungi, bacteria, fungal saprotrophs, and pathogens compared to EM-dominated sites.
- EM-dominated sites exhibited lower fungal diversity and bacteria:fungi ratios, linked to woody vegetation dominance and soil acidification.
- Differences in microbiome composition reflect distinct nutrient cycling rates and plant-soil feedback mechanisms between AM and EM systems.
Conclusions:
- Vegetation shifts, driven by global change and land use, can profoundly alter topsoil microbiome structure and function.
- Plant mycorrhizal type is a key determinant of soil microbial community composition and associated soil processes.
- The findings highlight the interconnectedness of vegetation, soil microbes, and ecosystem functioning.
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