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Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark
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Modern human changes in regulatory regions implicated in cortical development.

Juan Moriano1,2, Cedric Boeckx3,4,5

  • 1Universitat de Barcelona, Gran Via de les Corts Catalanes, Barcelona, Spain. jmoriano@ub.edu.

BMC Genomics
|April 18, 2020
PubMed
Summary
This summary is machine-generated.

Modern humans evolved unique gene regulation, unlike Neanderthals. This study identified 212 genes with modern human regulatory changes active in early brain development, offering insights into human evolution.

Keywords:
Chromatin regulationModern humansNeanderthals/DenisovansPaleogenomicsRegulatory regionsSETD1A/histone methyltransferase complex

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Area of Science:

  • Evolutionary Biology
  • Genomics
  • Neuroscience

Background:

  • Previous studies focused on protein changes between modern humans and extinct relatives.
  • Regulatory regions, crucial for gene expression, remain understudied in human evolution.
  • Modern human lineage shows few protein-altering changes compared to Neanderthals/Denisovans.

Purpose of the Study:

  • Identify regulatory DNA changes specific to modern humans compared to Neanderthals/Denisovans.
  • Investigate the role of these regulatory changes in early cortical development.
  • Explore the evolutionary significance of regulatory divergence.

Main Methods:

  • Integrated paleogenomic data with chromatin modification and interaction data.
  • Analyzed single-cell gene expression in neural progenitor cells.
  • Identified genes with modern human nucleotide changes in regulatory regions (enhancers/promoters).

Main Results:

  • Discovered 212 genes with modern human regulatory changes versus ancestral alleles in Neanderthals/Denisovans.
  • Found overlap between these regions and positively selected modern human loci and schizophrenia risk loci.
  • Identified enrichment for the SETD1A histone methyltransferase complex, involved in WNT signaling and neural progenitor proliferation.

Conclusions:

  • Highlights chromatin regulation as a key, overlooked factor in modern human evolution.
  • Complements research on protein-coding differences between human species.
  • Provides candidate genes for studying modern human-specific developmental trajectories.