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Updated: Dec 23, 2025

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Identification of NUDT5 Inhibitors From Approved Drugs
Xin-Yu Tong1, Xuan Liao1, Min Gao1
1Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan, China.
Abstract:
Recent studies have revealed the important role of NUDT5 in estrogen signaling and breast cancer, but research on the corresponding targeted therapy has just started. Drug repositioning strategy can effectively reduce the time and economic resources spent on drug discovery. To find novel inhibitors of NUDT5, we investigated the previously identified connectivity map-based drug association models and found eighteen FDA approved drugs as candidates. The molecular docking and molecular dynamic simulation were performed and revealed that fourteen organic drugs have the potential to bind the NUDT5 target. Eight representative drugs were selected to perform the cell line viability inhibition analysis, and the results showed that seven of them were able to suppress MCF7 breast cancer cells. Two drugs, nomifensine and isoconazole, showed lower IC50 than the known antiestrogens raloxifene and tamoxifen, and they deserve further pharmacodynamic investigations to test their feasibility for use as NUDT5 inhibitors.
Insights
This study identifies potential new breast cancer drugs by repurposing FDA-approved medications. Two drugs, nomifensine and isoconazole, show promise in inhibiting NUDT5, a target in estrogen signaling.
Area of Science:
- Oncology
- Pharmacology
- Biochemistry
Background:
- NUDT5 plays a crucial role in estrogen signaling pathways implicated in breast cancer development.
- Targeted therapies for NUDT5 are emerging, necessitating efficient drug discovery strategies.
- Drug repositioning offers a time- and cost-effective approach to identify novel therapeutic agents.
Purpose of the Study:
- To identify novel inhibitors of NUDT5 through drug repositioning.
- To evaluate the potential of FDA-approved drugs as NUDT5 inhibitors for breast cancer treatment.
Main Methods:
- Utilized connectivity map-based drug association models to identify candidate drugs.
- Performed molecular docking and molecular dynamic simulations to assess drug-target binding affinity.
- Conducted cell line viability assays to evaluate the efficacy of candidate drugs against MCF7 breast cancer cells.
Main Results:
- Eighteen FDA-approved drugs were identified as potential candidates for NUDT5 inhibition.
- Fourteen drugs demonstrated potential binding to the NUDT5 target based on computational analyses.
- Seven of eight tested drugs suppressed MCF7 breast cancer cell viability.
- Nomifensine and isoconazole exhibited lower IC50 values than established antiestrogens, raloxifene and tamoxifen.
Conclusions:
- Nomifensine and isoconazole are promising candidates for further investigation as NUDT5 inhibitors.
- These drugs warrant extensive pharmacodynamic studies to confirm their therapeutic potential in breast cancer.
- Drug repositioning is a viable strategy for discovering novel targeted therapies for NUDT5-related cancers.
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