Related Experiment Video
Updated: Dec 23, 2025

Synthesis of pH Dependent Pyrazole, Imidazole, and Isoindolone Dipyrrinone Fluorophores using a Claisen-Schmidt Condensation Approach
Published on: June 10, 2021
Four resonance structures elucidate double-bond isomerisation of a biological chromophore
Evgeniy V Gromov1, Tatiana Domratcheva1
1Max-Planck Institute for Medical Research, Jahnstraße 29, 69120 Heidelberg, Germany. tatjana.domratcheva@mpimf-heidelberg.mpg.de evgeniy.gromov@mpimf-heidelberg.mpg.de.
Abstract:
Photoinduced double-bond isomerisation of the chromophore of photoactive yellow protein (PYP) is highly sensitive to chromophore-protein interactions. On the basis of high-level ab initio calculations, we scrutinise the effect of hydrogen bonds on the photophysical and photochemical properties of the chromophore. We identify four resonance structures - two closed-shell and two biradicaloid - that elucidate the electronic structure of the ground and first excited states involved in the isomerisation process. Changing the relative energies of the resonance structures by hydrogen-bonding interactions tunes all photochemical properties of the chromophore in an interdependent manner. Our study sheds new light on the role of the chromophore electronic structure in tuning in photosensors and fluorescent proteins.
Related Concept Videos
Resonance
Stereoisomerism of Cyclic Compounds
Stereoisomerism
Isomers are different chemical species that have the same chemical formula.
Transition metal complexes often exist as geometric isomers, in which the same atoms are connected through the same types of bonds but with differences in their orientation in space. Coordination complexes with two different ligands in the cis and trans positions from a ligand of interest form isomers. For example, the octahedral [Co(NH3)4Cl2]+ ion has two isomers (Figure 1) In the cis...
Resonance and Hybrid Structures
Resonance Structures and Resonance Hybrids
The Lewis structure of a nitrite anion (NO2−) may actually be drawn in two different ways, distinguished by the locations of the N–O and N=O bonds.
UV–Vis Spectroscopy: Woodward–Fieser Rules
Molecules with Multiple Chiral Centers

