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Updated: Dec 23, 2025

Desthiobiotin-Streptavidin-Affinity Mediated Purification of RNA-Interacting Proteins in Mesothelioma Cells
Published on: April 25, 2018
The mRNA encoding the JUND tumor suppressor detains nuclear RNA-binding proteins to assemble polysomes that are
Gatikrushna Singh1, Sarah E Fritz2, Bradley Seufzer1
1Department of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, Minnesota 55108.
Abstract:
One long-standing knowledge gap is the role of nuclear proteins in mRNA translation. Nuclear RNA helicase A (DHX9/RHA) is necessary for the translation of the mRNAs of JUND (JunD proto-oncogene AP-1 transcription factor subunit) and HIV-1 genes, and nuclear cap-binding protein 1 (NCBP1)/CBP80 is a component of HIV-1 polysomes. The protein kinase mTOR activates canonical messenger ribonucleoproteins by post-translationally down-regulating the eIF4E inhibitory protein 4E-BP1. We posited here that NCBP1 and DHX9/RHA (RHA) support a translation pathway of JUND RNA that is independent of mTOR. We present evidence from reciprocal immunoprecipitation experiments indicating that NCBP1 and RHA both are components of messenger ribonucleoproteins in several cell types. Moreover, tandem affinity and RT-quantitative PCR results revealed that JUND mRNA is a component of a previously unknown ribonucleoprotein complex. Results from the tandem IP indicated that another component of the JUND-containing ribonucleoprotein complex is NCBP3, a recently identified ortholog of NCBP2/CBP20. We also found that NCBP1, NCBP3, and RHA, but not NCBP2, are components of JUND-containing polysomes. Mutational analysis uncovered two dsRNA-binding domains of RHA that are necessary to tether JUND-NCBP1/NCBP3 to polysomes. We also found that JUND translation is unaffected by inhibition of mTOR, unless RHA was down-regulated by siRNA. These findings uncover a noncanonical cap-binding complex consisting of NCBP1/NCBP3 and RHA substitutes for the eukaryotic translation initiation factors 4E and 4G and activates mTOR-independent translation of the mRNA encoding the tumor suppressor JUND.
Insights
Nuclear RNA helicase A (RHA) and nuclear cap-binding protein 1 (NCBP1) form a complex that drives JUND mRNA translation independently of mTOR signaling, revealing a novel pathway for tumor suppressor gene expression.
Area of Science:
- Molecular Biology
- Gene Expression Regulation
- Cancer Biology
Background:
- The role of nuclear proteins in mRNA translation remains a knowledge gap.
- Nuclear RNA helicase A (DHX9/RHA) and nuclear cap-binding protein 1 (NCBP1)/CBP80 are implicated in the translation of specific mRNAs, including JUND and HIV-1.
- The mTOR pathway regulates canonical mRNA translation by down-regulating 4E-BP1.
Purpose of the Study:
- To investigate the hypothesis that NCBP1 and RHA facilitate an mTOR-independent translation pathway for JUND mRNA.
- To identify novel ribonucleoprotein complexes involved in JUND mRNA translation.
Main Methods:
- Reciprocal immunoprecipitation experiments to detect protein-RNA interactions.
- Tandem affinity purification coupled with RT-quantitative PCR to identify complex components.
- Mutational analysis of RHA domains.
- siRNA-mediated knockdown of RHA and mTOR inhibition.
Main Results:
- NCBP1 and RHA are components of messenger ribonucleoproteins in multiple cell types.
- JUND mRNA forms a novel ribonucleoprotein complex with NCBP1, NCBP3, and RHA.
- RHA's dsRNA-binding domains are crucial for tethering JUND-NCBP1/NCBP3 to polysomes.
- JUND translation is mTOR-independent unless RHA is depleted.
Conclusions:
- A noncanonical cap-binding complex of NCBP1/NCBP3 and RHA substitutes for canonical translation initiation factors.
- This complex activates mTOR-independent translation of the JUND mRNA, encoding a tumor suppressor.
- The findings uncover a new mechanism regulating gene expression crucial for cancer biology.
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