Class I histone deacetylase inhibition is synthetic lethal with BRCA1 deficiency in breast cancer cells
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Updated: Dec 23, 2025

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Baoyuan Zhang1, Junfang Lyu1, Eun Ju Yang1
1Cancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Abstract:
Breast cancer susceptibility gene 1 (BRCA1) is a tumor suppressor gene, which is frequently mutated in breast and ovarian cancers. BRCA1 plays a key role in the homologous recombination directed DNA repair, allowing its deficiency to act as a therapeutic target of DNA damaging agents. In this study, we found that inhibition of the class I histone deacetylases (HDAC) exhibited synthetic lethality with BRCA1 deficiency in breast cancer cells. Transcriptome profiling and validation study showed that HDAC inhibition enhanced the expression of thioredoxin interaction protein (TXNIP), causing reactive oxygen species (ROS)-mediated DNA damage. This effect induced preferential apoptosis in BRCA1 -/- breast cancer cells where DNA repair system is compromised. Two animal experiments and gene expression-associated patients' survival analysis further confirmed in vivo synthetic lethality between BRCA1 and HDAC. Finally, the combination of inhibitors of HDAC and bromodomain and extra-terminal motif (BET), another BRCA1 synthetic lethality target that also works through oxidative stress-mediated DNA damage, showed a strong anticancer effect in BRCA1 -/- breast cancer cells. Together, this study provides a new therapeutic strategy for BRCA1-deficient breast cancer by targeting two epigenetic machineries, HDAC and BET.
Insights
Targeting histone deacetylases (HDAC) offers a new therapeutic strategy for BRCA1-deficient breast cancer. This approach induces synthetic lethality by increasing oxidative stress and DNA damage, preferentially killing cancer cells with BRCA1 mutations.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Breast cancer susceptibility gene 1 (BRCA1) is a tumor suppressor crucial for DNA repair.
- BRCA1 mutations are common in breast and ovarian cancers, making BRCA1 deficiency a therapeutic target.
- DNA repair deficiencies, like in BRCA1-mutated cancers, create vulnerabilities exploitable by certain drugs.
Purpose of the Study:
- To investigate the therapeutic potential of inhibiting class I histone deacetylases (HDAC) in BRCA1-deficient breast cancer.
- To elucidate the molecular mechanisms underlying the synthetic lethality observed between BRCA1 deficiency and HDAC inhibition.
- To evaluate the combined efficacy of HDAC inhibitors with other targeted therapies in BRCA1-mutated breast cancer models.
Main Methods:
- Utilized transcriptome profiling to identify molecular changes induced by HDAC inhibition.
- Validated the role of thioredoxin interaction protein (TXNIP) and reactive oxygen species (ROS) in mediating DNA damage.
- Conducted in vitro cell-based assays, in vivo animal experiments, and patient survival analysis.
Main Results:
- HDAC inhibition led to increased TXNIP expression and ROS-mediated DNA damage in breast cancer cells.
- BRCA1-deficient cells exhibited synthetic lethality with HDAC inhibition, undergoing preferential apoptosis.
- In vivo studies and patient data confirmed the synthetic lethality between BRCA1 and HDAC.
- Combination therapy with HDAC and bromodomain and extra-terminal motif (BET) inhibitors showed significant anticancer effects.
Conclusions:
- Class I HDAC inhibition represents a promising synthetic lethal strategy for BRCA1-deficient breast cancer.
- The mechanism involves enhanced TXNIP expression, ROS production, and subsequent DNA damage.
- Targeting epigenetic regulators like HDAC and BET offers a novel therapeutic avenue for BRCA1-mutated cancers.
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