Related Experiment Video
Updated: Dec 23, 2025

Selection-dependent and Independent Generation of CRISPR/Cas9-mediated Gene Knockouts in Mammalian Cells
Published on: June 16, 2017
AAV-CRISPR Gene Editing Is Negated by Pre-existing Immunity to Cas9
Ang Li1, Mark R Tanner2, Ciaran M Lee1
1Department of Bioengineering, Rice University, Houston, TX 77030, USA.
Abstract:
Adeno-associated viral (AAV) vectors are a leading candidate for the delivery of CRISPR-Cas9 for therapeutic genome editing in vivo. However, AAV-based delivery involves persistent expression of the Cas9 nuclease, a bacterial protein. Recent studies indicate a high prevalence of neutralizing antibodies and T cells specific to the commonly used Cas9 orthologs from Streptococcus pyogenes (SpCas9) and Staphylococcus aureus (SaCas9) in humans. We tested in a mouse model whether pre-existing immunity to SaCas9 would pose a barrier to liver genome editing with AAV packaging CRISPR-Cas9. Although efficient genome editing occurred in mouse liver with pre-existing SaCas9 immunity, this was accompanied by an increased proportion of CD8+ T cells in the liver. This cytotoxic T cell response was characterized by hepatocyte apoptosis, loss of recombinant AAV genomes, and complete elimination of genome-edited cells, and was followed by compensatory liver regeneration. Our results raise important efficacy and safety concerns for CRISPR-Cas9-based in vivo genome editing in the liver.
Insights
Pre-existing immunity to Cas9 can trigger a T cell response, leading to the elimination of genome-edited cells in the liver. This highlights safety concerns for in vivo CRISPR-Cas9 gene therapy.
Area of Science:
- Gene therapy
- Immunology
- Molecular biology
Background:
- Adeno-associated viral (AAV) vectors are promising for in vivo CRISPR-Cas9 gene editing.
- Cas9 nucleases, like SpCas9 and SaCas9, are bacterial proteins.
- Pre-existing immunity to Cas9 is common in humans, potentially impacting therapeutic efficacy.
Purpose of the Study:
- To investigate if pre-existing immunity to Staphylococcus aureus Cas9 (SaCas9) affects liver genome editing using AAV-CRISPR-Cas9 in mice.
- To assess the safety and efficacy of in vivo genome editing in the presence of anti-Cas9 immunity.
Main Methods:
- A mouse model with pre-existing immunity to SaCas9 was used.
- AAV vectors packaging CRISPR-Cas9 were administered for liver genome editing.
- Immune responses, genome editing efficiency, and liver cell viability were analyzed.
Main Results:
- Efficient genome editing was observed in the mouse liver despite pre-existing SaCas9 immunity.
- An increase in CD8+ T cells was detected in the liver.
- This T cell response led to hepatocyte apoptosis, loss of AAV genomes, and elimination of edited cells, followed by liver regeneration.
Conclusions:
- Pre-existing immunity to Cas9 can elicit a detrimental CD8+ T cell response in the liver.
- This immune response compromises the efficacy and safety of AAV-CRISPR-Cas9-mediated in vivo genome editing.
- Further research is needed to address these safety concerns for therapeutic applications.
Related Concept Videos
CRISPR/Cas9 Genome Editing
CRISPR
CRISPR and crRNAs
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
The Antiviral System of Bacteria and Archaea: CRISPR
Homologous Recombination

