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Sporulation is a complex developmental process that allows certain Gram-positive bacteria, such as Bacillus subtilis and Clostridium species, to survive extreme environmental conditions. This process is tightly regulated by a series of signaling cascades and transcriptional controls, ensuring the formation of a highly resistant endospore.Sporulation is triggered by unfavorable conditions, such as nutrient depletion, and is governed by a phosphorelay system. One of the sensor kinases, such as...
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A Novel Microdissection Approach to Recovering Mycobacterium tuberculosis Specific Transcripts from Formalin Fixed Paraffin Embedded Lung Granulomas
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Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis.

Eliza J R Peterson1, Abrar A Abidi1, Mario L Arrieta-Ortiz1

  • 1Institute for Systems Biology, Seattle, WA 98109, USA.

Cell Reports
|April 30, 2020
PubMed
Summary

Mycobacterium tuberculosis (MTB) enters dormancy to evade the immune system. This study reveals the gene regulatory circuits controlling MTB

Keywords:
Mycobacterium tuberculosisdormancygene regulatory networkgranulomahypoxiareactorregulatory motifsstate transitionsystems biologytranscriptional state

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Area of Science:

  • Microbiology and Molecular Biology
  • Infectious Diseases
  • Genomics and Transcriptomics

Background:

  • Mycobacterium tuberculosis (MTB) exhibits dormancy, a critical factor in persistent infections and treatment evasion.
  • Understanding the gene regulatory mechanisms governing MTB's phenotypic transitions during latency and reactivation is crucial for developing new therapies.
  • Previous studies faced challenges in precisely controlling conditions to capture these dynamic transcriptional events.

Purpose of the Study:

  • To investigate the transcriptional events during Mycobacterium tuberculosis dormancy transitions.
  • To identify the gene regulatory circuits responsible for MTB's entry into and exit from dormancy.
  • To elucidate the genetic architecture underlying MTB's dormancy and reactivation.

Main Methods:

  • Development of an experimental system for precise control of dissolved oxygen levels in MTB cultures.
  • Genome-wide transcription factor binding mapping.
  • Network topology analysis to understand regulatory circuit architecture.

Main Results:

  • Identification of regulatory circuits that drive sequential transitions across six distinct MTB states.
  • These circuits encompass over three-fifths of the MTB genome, highlighting their broad impact.
  • The identified genetic programs explain the synchronized entry of MTB into a dormant state.

Conclusions:

  • The study uncovers key gene regulatory programs governing Mycobacterium tuberculosis dormancy.
  • These programs explain the pathogen's ability to enter a dormant state primed for host infection upon favorable conditions.
  • Findings provide insights into MTB's persistence and potential therapeutic targets.