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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Replication analysis of variants associated with multiple sclerosis risk
Mohammad Dashti1, Khadijah Ateyah2, Raed Alroughani3
1Genetics and Bioinformatics department, Dasman Diabetes Institute, Sharq, Kuwait City, Kuwait.
Abstract:
Multiple Sclerosis (MS) is a complex chronic neurodegenerative disorder resulting from an autoimmune reaction against myelin. So far, many genetic variants have been reported to associate with MS risk however their association is inconsistent across different populations. Here we investigated the association of the most consistently reported genetic MS risk variants in the Kuwaiti MS population in a case-control study designs. Of the 94 reported MS risk variants four variants showed MS risk association in Arabs exome analysis (EVI5 rs11808092 p = 0.0002; TNFRSF1A rs1800693 p = 0.00003; MTHFR rs1801131 p = 0.038; and CD58 rs1414273 p = 0.00007). Replication analysis in Kuwaiti MS cases and healthy controls confirmed EVI5 rs11808092A (OR: 1.6, 95%CI: 1.19-2.16, p = 0.002) and MTHFR rs1801131G (OR: 1.79, 95%CI: 1.3-2.36, p = 0.001) as MS risk genetic factors, while TNFRSF1A rs1800693C had a marginal MS risk association (OR: 1.36, 95%CI: 1.04-1.78, p = 0.025) in the Kuwaiti population. CD58 rs1414273 did not sustain risk association (p = 0.37). In conclusion, EVI5 rs11808092A, TNFRSF1A rs1800693C and MTHFR rs1801131G are MS risk factors in the Kuwaiti population. Further investigations into their roles in MS pathogenesis and progression are merited.
Insights
Genetic factors influence Multiple Sclerosis (MS) risk in the Kuwaiti population. Variants in EVI5, MTHFR, and TNFRSF1A genes are identified as significant MS risk factors.
Area of Science:
- Neuroimmunology
- Genetics
- Epidemiology
Background:
- Multiple Sclerosis (MS) is a chronic neurodegenerative disease driven by autoimmune responses against myelin.
- Genetic associations with MS risk vary significantly across diverse populations.
- Understanding population-specific genetic risk factors is crucial for targeted prevention and treatment strategies.
Purpose of the Study:
- To investigate the association of established Multiple Sclerosis (MS) risk genetic variants within the Kuwaiti Arab population.
- To identify specific genetic factors contributing to MS susceptibility in this demographic.
- To validate findings from exome analysis through replication studies.
Main Methods:
- Case-control study design comparing Kuwaiti MS patients and healthy controls.
- Exome analysis of 94 reported MS risk variants.
- Replication analysis to confirm associations of promising variants.
Main Results:
- Four variants (EVI5 rs11808092, TNFRSF1A rs1800693, MTHFR rs1801131, CD58 rs1414273) initially showed association in Arab exome analysis.
- Replication confirmed EVI5 rs11808092A (OR: 1.6, p=0.002) and MTHFR rs1801131G (OR: 1.79, p=0.001) as significant MS risk factors in Kuwait.
- TNFRSF1A rs1800693C showed marginal association (OR: 1.36, p=0.025), while CD58 rs1414273 did not sustain risk association.
Conclusions:
- EVI5 rs11808092A, TNFRSF1A rs1800693C, and MTHFR rs1801131G are confirmed MS risk factors in the Kuwaiti population.
- These findings highlight population-specific genetic contributions to MS.
- Further research is warranted to elucidate the roles of these variants in MS pathogenesis and progression.
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