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Updated: Dec 22, 2025

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
Caught in the act: structural dynamics of replication origin activation and fork progression
Jacob S Lewis1, Alessandro Costa1
1Macromolecular Machines Laboratory, The Francis Crick Institute, London NW1 1AT, U.K.
Recent advances in single-particle cryo-electron microscopy (cryo-EM) and single-molecule techniques visualize DNA replication in eukaryotes. These methods reveal the dynamic processes of origin activation and replication fork progression, presenting new structural biology challenges.
Area of Science:
- Structural biology
- Molecular biology
- Biochemistry
Background:
- Eukaryotic DNA replication is a fundamental biological process essential for cell division and genome stability.
- Understanding the intricate molecular mechanisms of DNA replication initiation and elongation is crucial for deciphering cellular functions and diseases.
Purpose of the Study:
- To review recent advancements in visualizing eukaryotic DNA replication using cutting-edge techniques.
- To highlight the challenges and opportunities in studying the dynamic nature of DNA replication in vitro.
Main Methods:
- Single-particle cryo-electron microscopy (cryo-EM) for high-resolution structural determination.
- Single-molecule approaches for observing dynamic molecular processes in real-time.
Main Results:
- Demonstration of visualizing reconstituted eukaryotic DNA replication reactions in vitro.
- Insights into the dynamic cascade of events during replication origin activation.
- Characterization of molecular rearrangements during replication fork progression.
Conclusions:
- Single-particle cryo-EM and single-molecule methods are powerful tools for dissecting complex molecular machines like the replication machinery.
- Future structural studies will focus on capturing transient states and dynamic transitions in DNA replication.
- Overcoming challenges in visualizing dynamic processes will advance our understanding of genome replication fidelity and regulation.
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